Shaping robust system through evolution

Type: Article

Publication Date: 2008-06-01

Citations: 18

DOI: https://doi.org/10.1063/1.2912458

Abstract

Biological functions are generated as a result of developmental dynamics that form phenotypes governed by genotypes. The dynamical system for development is shaped through genetic evolution following natural selection based on the fitness of the phenotype. Here we study how this dynamical system is robust to noise during development and to genetic change by mutation. We adopt a simplified transcription regulation network model to govern gene expression, which gives a fitness function. Through simulations of the network that undergoes mutation and selection, we show that a certain level of noise in gene expression is required for the network to acquire both types of robustness. The results reveal how the noise that cells encounter during development shapes any network's robustness, not only to noise but also to mutations. We also establish a relationship between developmental and mutational robustness through phenotypic variances caused by genetic variation and epigenetic noise. A universal relationship between the two variances is derived, akin to the fluctuation-dissipation relationship known in physics.

Locations

  • Chaos An Interdisciplinary Journal of Nonlinear Science - View
  • arXiv (Cornell University) - PDF
  • PubMed - View
  • DataCite API - View

Similar Works

Action Title Year Authors
+ PDF Chat Evolution of Robustness to Noise and Mutation in Gene Expression Dynamics 2007 Kunihiko Kaneko
+ PDF Chat Evolution of Robustness and Plasticity under Environmental Fluctuation: Formulation in Terms of Phenotypic Variances 2012 Kunihiko Kaneko
+ Noise control and utility: from regulatory network to spatial patterning 2020 Qing Nie
Lingxia Qiao
Yuchi Qiu
Lei Zhang
Wei Zhao
+ Gene expression noise accelerates the evolution of a biological oscillator 2022 Yen Ting Lin
Nicolas E. Buchler
+ PDF Chat Gene expression noise accelerates the evolution of a biological oscillator 2022 Yen Ting Lin
Nicolas E. Buchler
+ Gene network robustness as a multivariate character 2021 Arnaud Le Rouzic
+ Phenotypic robustness can increase phenotypic variability after non-genetic perturbations in gene regulatory circuits 2010 Carlos Espinosa‐Soto
Olivier Martin
Andreas Wagner
+ Phenotypic robustness can increase phenotypic variability after non-genetic perturbations in gene regulatory circuits 2010 Carlos Espinosa‐Soto
Olivier Martin
Andreas Wagner
+ PDF Chat Gene network robustness as a multivariate character 2022 Arnaud Le Rouzic
+ PDF Chat Phenotypic Plasticity, Developmental Instability, and Robustness: The Concepts and How They Are Connected 2019 Christian Peter Klingenberg
+ Noise in Biomolecular Systems: Modeling, Analysis, and Control Implications 2022 Corentin Briat
Mustafa Khammash
+ PDF Chat Noise in Biomolecular Systems: Modeling, Analysis, and Control Implications 2022 Corentin Briat
Mustafa Khammash
+ PDF Chat Phenotypic robustness can increase phenotypic variability after nongenetic perturbations in gene regulatory circuits 2011 Carlos Espinosa‐Soto
Olivier Martin
Andreas Wagner
+ A unified mechanistic framework for developmental and evolutionary change 2018 Enrico Borriello
Sara Imari Walker
Manfred D. Laubichler
+ Relationship among Phenotypic Plasticity, Genetic and Epigenetic Fluctuations, Robustness, and Evolovability; Waddington's Legacy revisited under the Spirit of Einstein 2008 Kunihiko Kaneko
+ PDF Chat A unified formal framework for developmental andevolutionary change in gene regulatory network models 2018 Enrico Borriello
Sara Imari Walker
Manfred D. Laubichler
+ PDF Chat Cell phenotypes as macrostates of the GRN dynamics 2020 Enrico Borriello
Sara Imari Walker
Manfred D. Laubichler
+ Dynamical Theory for Adaptive Systems 2023 Tuan Minh Pham
Kunihiko Kaneko
+ Robustness and complexity 2023 Steven A. Frank
+ PDF Chat Emergence of cooperative bistability and robustness of gene regulatory networks 2020 Shintaro Nagata
Macoto Kikuchi