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A Bayesian Approach to Correcting the Attenuation Bias of Regression Using Polygenic Risk Score
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2025
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Geyu Zhou
Xinyue Qie
Hongyu Zhao
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BenTo: Benchmark Task Reduction with In-Context Transferability
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2024
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Hongyu Zhao
Ming Li
Lichao Sun
Tianyi Zhou
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Degrees of Freedom: Search Cost and Self-consistency
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2024
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Lijun Wang
Hongyu Zhao
Xiaodan Fan
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Geneverse: A collection of Open-source Multimodal Large Language Models
for Genomic and Proteomic Research
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2024
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Tian-Yu Liu
Yijia Xiao
Xiao Luo
Hua Xu
W. Jim Zheng
Hongyu Zhao
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Superfiltering: Weak-to-Strong Data Filtering for Fast
Instruction-Tuning
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2024
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Ming Li
Yong Zhang
Shwai He
Zhitao Li
Hongyu Zhao
Jianzong Wang
Ning Cheng
Tianyi Zhou
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Decomposition with Monotone B-splines: Fitting and Testing
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2024
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Lijun Wang
Xiaodan Fan
Hongyu Zhao
Jun S. Liu
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Geneverse: A Collection of Open-source Multimodal Large Language Models for Genomic and Proteomic Research
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2024
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Tian-Yu Liu
Yijia Xiao
Xiao Luo
Hua Xu
W. Jim Zheng
Hongyu Zhao
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A Bayesian Approach to Correcting the Attenuation Bias of Regression Using Polygenic Risk Score
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2023
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Geyu Zhou
Xinyue Qie
Hongyu Zhao
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A robust penalized-regression-based method for multivariable Mendelian randomization using GWAS summary statistics
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2023
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Hongyu Zhao
Wei Jiang
Shuang Song
Liangbo Lyu
Changgee Chang
Yize Zhao
Baolin Wu
Lan Wang
Matthew J. Girgenti
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Multi-Ship Tracking by Robust Similarity metric
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2023
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Hongyu Zhao
Gongming Wei
Yang Xiao
Xianglei Xing
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Statistical assessment of biomarker replicability using MAJAR method
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2023
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Yuhan Xie
Song Zhai
Wei Jiang
Hongyu Zhao
Devan V. Mehrotra
Judong Shen
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Factor Augmented Inverse Regression and its Application to Microbiome Data Analysis
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2023
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Dao-Lin Pang
Hongyu Zhao
Tao Wang
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eQTL studies: from bulk tissues to single cells
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2023
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Jingfei Zhang
Hongyu Zhao
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Bayesian subtyping for multi-state brain functional connectome with application on adolescent brain cognition
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2023
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Tianqi Chen
Chichun Tan
Hongyu Zhao
R. Todd Constable
Sarah W. Yip
Yize Zhao
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Application of Deep Learning Methods for Distinguishing Gamma-Ray Bursts from Fermi/GBM TTE Data
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2023
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Peng Zhang
Bing Li
Renzhou Gui
S. L. Xiong
Ze-Cheng Zou
Xiang-Gao Wang
XiaoâBo Li
Ce Cai
Yi Zhao
Yan-Qiu Zhang
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Learning Brain Connectivity in Social Cognition with Dynamic Network Regression
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2023
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Maoyu Zhang
Biao Cai
Wenlin Dai
Dehan Kong
Hongyu Zhao
Jingfei Zhang
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Degrees of Freedom: Search Cost and Self-consistency
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2023
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Lijun Wang
Hongyu Zhao
Xiaodan Fan
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+
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MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data
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2023
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Tianyu Liu
Yuge Wang
Rex Ying
Hongyu Zhao
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eQTL Studies: from Bulk Tissues to Single Cells
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2023
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Jingfei Zhang
Hongyu Zhao
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Statistical Assessment of Biomarker Replicability using MAJAR Method
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2022
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Yuhan Xie
Song Zhai
Wei Jiang
Hongyu Zhao
Devan V. Mehrotra
Judong Shen
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Penetrance and Pleiotropy of Polygenic Risk Scores for Schizophrenia, Bipolar Disorder, and Depression Among Adults in the US Veterans Affairs Health Care System
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2022
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Tim B. Bigdeli
Georgios Voloudakis
Peter B. Barr
Bryan R. Gorman
Giulio Genovese
Roseann E. Peterson
David E. Burstein
Vlad I. Velicu
Yuli Li
Rishab Gupta
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A general kernel boosting framework integrating pathways for predictive modeling based on genomic data
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2022
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Li Zeng
Zhaolong Yu
Yiliang Zhang
Hongyu Zhao
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Low-Rank Regression Models for Multiple Binary Responses and their Applications to Cancer Cell-Line Encyclopedia Data
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2022
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Seyoung Park
Eun Ryung Lee
Hongyu Zhao
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Clustering High-Dimensional Data via Feature Selection
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2022
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Tianqi Liu
Y. Lu
Biqing Zhu
Hongyu Zhao
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Penetrance and Pleiotropy of Polygenic Risk Scores for Schizophrenia, Bipolar Disorder, and Depression in the VA Health Care System
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2022
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Tim B. Bigdeli
Georgios Voloudakis
Peter B. Barr
Bryan R. Gorman
Giulio Genovese
Roseann E. Peterson
David E. Burstein
Vlad I. Velicu
Yuli Li
Rishab Gupta
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fastANCOM: a fast method for analysis of compositions of microbiomes
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2022
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Chao Zhou
Huimin Wang
Hongyu Zhao
Tao Wang
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Characterizing Spatiotemporal Transcriptome of the Human Brain Via Low-Rank Tensor Decomposition
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2022
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Tianqi Liu
Ming Yuan
Hongyu Zhao
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Statistical Inference of Cell-type Proportions Estimated from Bulk Expression Data
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2022
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Biao Cai
Jingfei Zhang
Hongyu Li
Chang Su
Hongyu Zhao
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Clustering High-dimensional Data via Feature Selection
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2022
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Tianqi Liu
Y. Lu
Biqing Zhu
Hongyu Zhao
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Additive Conditional Independence for Large and Complex Biological Structures
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2022
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KuangâYao Lee
Bing Li
Hongyu Zhao
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Nonparametric Functional Graphical Modeling Through Functional Additive Regression Operator
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2021
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KuangâYao Lee
Lexin Li
Bing Li
Hongyu Zhao
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A Manifold Proximal Linear Method for Sparse Spectral Clustering with Application to Single-Cell RNA Sequencing Data Analysis
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2021
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Zhongruo Wang
Bingyuan Liu
Shixiang Chen
Shiqian Ma
Lingzhou Xue
Hongyu Zhao
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Theory and software for boosted nonparametric hazard estimation
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2021
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Donald Lee
Ningyuan Chen
Hemant Ishwaran
Xiaochen Wang
Arash Pakbin
Bobak J. Mortazavi
Hongyu Zhao
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Variance Estimation and Confidence Intervals from High-dimensional Genome-wide Association Studies Through Misspecified Mixed Model Analysis
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2021
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Cecilia Dao
Jiming Jiang
Debashis Paul
Hongyu Zhao
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A Set of Efficient Methods to Generate High-Dimensional Binary Data With Specified Correlation Structures
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2020
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Wei Jiang
Shuang Song
Lin Hou
Hongyu Zhao
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A Manifold Proximal Linear Method for Sparse Spectral Clustering with
Application to Single-Cell RNA Sequencing Data Analysis
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2020
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Zhongruo Wang
Bingyuan Liu
Shixiang Chen
Shiqian Ma
Lingzhou Xue
Hongyu Zhao
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A novel machine learning unsupervised algorithm for sleep/wake identification using actigraphy
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2020
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Xinyue Li
Yunting Zhang
Fan Jiang
Hongyu Zhao
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Bayesian Semi-parametric Design (BSD) for adaptive dose-finding with multiple strata
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2020
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Mo Li
Rachael Liu
Jianchang Lin
Veronica Bunn
Hongyu Zhao
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BoXHED: Boosted eXact Hazard Estimator with Dynamic covariates
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2020
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Xiaochen Wang
Arash Pakbin
Bobak J. Mortazavi
Hongyu Zhao
Donald Lee
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A Manifold Proximal Linear Method for Sparse Spectral Clustering with Application to Single-Cell RNA Sequencing Data Analysis
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2020
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Zhongruo Wang
Bingyuan Liu
Shixiang Chen
Shiqian Ma
Lingzhou Xue
Hongyu Zhao
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A set of efficient methods to generate high-dimensional binary data with specified correlation structures
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2020
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Wei Jiang
Shuang Song
Lin Hou
Hongyu Zhao
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A general kernel boosting framework integrating pathways for predictive modeling based on genomic data
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2020
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Li Zeng
Zhaolong Yu
Yiliang Zhang
Hongyu Zhao
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Joint Models for Time-to-Event Data and Longitudinal Biomarkers of High Dimension
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2019
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Molei Liu
Jiehuan Sun
Jose D. HerazoâMaya
Naftali Kaminski
Hongyu Zhao
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A Pathway-Based Kernel Boosting Method for Sample Classification Using Genomic Data
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2019
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Li Zeng
Zhaolong Yu
Hongyu Zhao
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PDF
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Phylogeny-based tumor subclone identification using a Bayesian feature allocation model
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2019
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Li Zeng
Joshua L. Warren
Hongyu Zhao
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PDF
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Prediction Analysis for Microbiome Sequencing Data
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2019
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Tao Wang
Can Yang
Hongyu Zhao
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Inference of Dynamic Graph Changes for Functional Connectome
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2019
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Dingjue Ji
Junwei Lu
Yiliang Zhang
Hongyu Zhao
Siyuan Gao
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Regularized Latent Class Model for Joint Analysis of High-Dimensional Longitudinal Biomarkers and a Time-to-Event Outcome
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2018
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Jiehuan Sun
Jose D. HerazoâMaya
Philip L. Molyneaux
Toby M. Maher
Naftali Kaminski
Hongyu Zhao
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PDF
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Distance-correlation based gene set analysis in longitudinal studies
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2018
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Jiehuan Sun
Jose D. HerazoâMaya
Xiu Huang
Naftali Kaminski
Hongyu Zhao
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Phylogeny-based tumor subclone identification using a Bayesian feature allocation model
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2018
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Li Zeng
Joshua L. Warren
Hongyu Zhao
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+
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A pathway-based kernel boosting method for sample classification using genomic data
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2018
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Li Zeng
Zhaolong Yu
Hongyu Zhao
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Pivotal variable detection of the covariance matrix and its application to high-dimensional factor models
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2017
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Junlong Zhao
Hongyu Zhao
Li Zhu
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PDF
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A Dirichlet process mixture model for clustering longitudinal gene expression data
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2017
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Jiehuan Sun
Jose D. HerazoâMaya
Naftali Kaminski
Hongyu Zhao
Joshua L. Warren
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PDF
Chat
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On Joint Estimation of Gaussian Graphical Models for Spatial and Temporal Data
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2017
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Zhixiang Lin
Tao Wang
Can Yang
Hongyu Zhao
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Characterizing Spatiotemporal Transcriptome of Human Brain via Low Rank Tensor Decomposition
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2017
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Tianqi Liu
Ming Yuan
Hongyu Zhao
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+
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Prediction analysis for microbiome sequencing data
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2017
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Tao Wang
Can Yang
Hongyu Zhao
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+
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Graphical model selection with latent variables
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2017
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Changjing Wu
Hongyu Zhao
Huaying Fang
Minghua Deng
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Pivotal Variable Detection of the Covariance Matrix and Its Application to High-Dimensional Factor Models
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2017
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Junlong Zhao
Hongyu Zhao
Li Zhu
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PDF
Chat
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A Bayesian semiparametric factor analysis model for subtype identification
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2017
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Jiehuan Sun
Joshua L. Warren
Hongyu Zhao
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On the Convergence of the EM Algorithm: From the Statistical Perspective
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2016
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Chong Wu
Can Yang
Hongyu Zhao
Ji Zhu
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Estimating a sparse reduction for general regression in high dimensions
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2016
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Tao Wang
Mengjie Chen
Hongyu Zhao
Lixing Zhu
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Greedy Outcome Weighted Tree Learning of Optimal Personalized Treatment Rules
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2016
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Ruoqing Zhu
Ying-Qi Zhao
Guanhua Chen
Shuangge Ma
Hongyu Zhao
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PDF
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On an additive partial correlation operator and nonparametric estimation of graphical models
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2016
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Kuang-Yao Lee
Bing Li
Hongyu Zhao
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Change point analysis of histone modifications reveals epigenetic blocks linking to physical domains
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2016
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Mengjie Chen
Haifan Lin
Hongyu Zhao
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+
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Variable Selection via Additive Conditional Independence
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2016
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Kuang-Yao Lee
Bing Li
Hongyu Zhao
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PDF
Chat
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Change point analysis of histone modifications reveals epigenetic blocks linking to physical domains
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2016
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Mengjie Chen
Haifan Lin
Hongyu Zhao
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Ultrahigh Dimensional Feature Selection via Kernel Canonical Correlation Analysis
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2016
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Tianqi Liu
KuangâYao Lee
Hongyu Zhao
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+
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Joint Models for Time-to-Event Data and Longitudinal Biomarkers of High Dimension
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2016
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Molei Liu
Jiehuan Sun
Jose D. HerazoâMaya
Naftali Kaminski
Hongyu Zhao
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+
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A Bayesian Semiparametric Factor Analysis Model for Subtype Identification
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2016
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Jiehuan Sun
Joshua L. Warren
Hongyu Zhao
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Distance-Correlation based Gene Set Analysis in Longitudinal Studies
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2016
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Jiehuan Sun
Jose D. HerazoâMaya
Xiu Huang
Naftali Kaminski
Hongyu Zhao
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On the Convergence of the EM Algorithm: A Data-Adaptive Analysis
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2016
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Chong Wu
Can Yang
Hongyu Zhao
Ji Zhu
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+
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A Dirichlet Process Mixture Model for Clustering Longitudinal Gene Expression Data
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2016
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Jiehuan Sun
Jose D. HerazoâMaya
Naftali Kaminski
Hongyu Zhao
Joshua L. Warren
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PDF
Chat
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Asymptotically Normal and Efficient Estimation of Covariate-Adjusted Gaussian Graphical Model
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2016
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Mengjie Chen
Zhao Ren
Hongyu Zhao
Harrison H. Zhou
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Posterior Contraction Rates of the Phylogenetic Indian Buffet Processes
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2015
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Mengjie Chen
Chao Gao
Hongyu Zhao
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PDF
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Asymptotically Normal and Efficient Estimation of Covariate-Adjusted Gaussian Graphical Model
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2015
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Mengjie Chen
Zhao Ren
Hongyu Zhao
Harrison H. Zhou
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PDF
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Research on Wargaming for Equipment Support Based On Computer
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2015
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Zheng Zhou
Hongyu Zhao
Xin Shi
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+
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Asymptotically Normal and Efficient Estimation of Covariate-Adjusted Gaussian Graphical Model
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2015
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Mengjie Chen
Zhao Ren
Hongyu Zhao
Harrison H. Zhou
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On Joint Estimation of Gaussian Graphical Models for Spatial and Temporal Data
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2015
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Zhixiang Lin
Tao Wang
Can Yang
Hongyu Zhao
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PDF
Chat
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Low-Rank Modeling and Its Applications in Image Analysis
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2014
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Xiaowei Zhou
Can Yang
Hongyu Zhao
Weichuan Yu
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+
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Detection boundary and Higher Criticism approach for rare and weak genetic effects
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2014
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Zheyang Wu
Yiming Sun
Shiquan He
Judy H. Cho
Hongyu Zhao
Jiashun Jin
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PDF
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Sparse Regression by Projection and Sparse Discriminant Analysis
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2014
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Xin Qi
Ruiyan Luo
Raymond J. Carroll
Hongyu Zhao
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PDF
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On an Additive Semigraphoid Model for Statistical Networks With Application to Pathway Analysis
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2014
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Bing Li
Hyonho Chun
Hongyu Zhao
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+
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Estimation for ultra-high dimensional factor model: a pivotal variable detection based approach
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2014
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Junlong Zhao
Hongyu Zhao
Lixing Zhu
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+
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High-dimensional genome-wide association study and misspecified mixed model analysis
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2014
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Jiming Jiang
Cong Li
Debashis Paul
Can Yang
Hongyu Zhao
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GPA: A statistical approach to prioritizing GWAS results by integrating pleiotropy information and annotation data
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2014
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Dongjun Chung
Can Yang
Cong Li
Joel Gelernter
Hongyu Zhao
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+
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Low-Rank Modeling and Its Applications in Image Analysis
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2014
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Xiaowei Zhou
Can Yang
Hongyu Zhao
Weichuan Yu
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+
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Change point analysis of histone modifications reveals epigenetic blocks with distinct regulatory activity and biological functions
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2013
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Mengjie Chen
Haifan Lin
Hongyu Zhao
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Phylogenetic Indian Buffet Process: Theory and Applications in Integrative Analysis of Cancer Genomics
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2013
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Mengjie Chen
Chao Gao
Hongyu Zhao
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Adaptive clinical trial designs to detect interaction between treatment and a dichotomous biomarker
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2013
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Hongjian Zhu
Feifang Hu
Hongyu Zhao
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PDF
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Utilizing protein structure to identify non-random somatic mutations
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2013
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Gregory Ryslik
YuâWei Cheng
KeiâHoi Cheung
Yorgo Modis
Hongyu Zhao
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PDF
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Estimating the proportion of true null hypotheses using the pattern of observed<i>p</i>-values
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2013
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Tiejun Tong
Zeny Feng
Julia S. Hilton
Hongyu Zhao
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A Penalized Multi-trait Mixed Model for Association Mapping in Pedigree-based GWAS
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2013
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Jin Liu
Can Yang
Xingjie Shi
Cong Li
Jian Huang
Hongyu Zhao
Shuangge Ma
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Posterior Contraction Rates of the Phylogenetic Indian Buffet Processes
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2013
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Mengjie Chen
Chao Gao
Hongyu Zhao
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A Spatial Simulation Approach to Account for Protein Structure When Identifying Non-Random Somatic Mutations
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2013
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Gregory Ryslik
YuâWei Cheng
KeiâHoi Cheung
Robert Bjornson
Daniel Zelterman
Yorgo Modis
Hongyu Zhao
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Improving genetic risk prediction by leveraging pleiotropy
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2013
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Cong Li
Can Yang
Joel Gelernter
Hongyu Zhao
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A Graph Theoretic Approach to Utilizing Protein Structure to Identify Non-Random Somatic Mutations
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2013
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Gregory Ryslik
YuâWei Cheng
KeiâHoi Cheung
Yorgo Modis
Hongyu Zhao
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+
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Asymptotically Normal and Efficient Estimation of Covariate-Adjusted Gaussian Graphical Model
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2013
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Mengjie Chen
Zhao Ren
Hongyu Zhao
Harrison H. Zhou
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+
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Change Point Analysis of Histone Modifications Reveals Epigenetic Blocks Linking to Physical Domains
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2013
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Mengjie Chen
Haifan Lin
Hongyu Zhao
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PDF
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Statistical properties on semiparametric regression for evaluating pathway effects
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2012
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Inyoung Kim
Herbert Pang
Hongyu Zhao
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PDF
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Sparse principal component analysis by choice of norm
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2012
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Xin Qi
Ruiyan Luo
Hongyu Zhao
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+
PDF
Chat
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Sparse Estimation of Conditional Graphical Models With Application to Gene Networks
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2012
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Bing Li
Hyonho Chun
Hongyu Zhao
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+
PDF
Chat
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Improved mean estimation and its application to diagonal discriminant analysis
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2011
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Tiejun Tong
Liang Chen
Hongyu Zhao
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+
PDF
Chat
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Bayesian hierarchical modeling for signaling pathway inference from single cell interventional data
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2011
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Ruiyan Luo
Hongyu Zhao
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+
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Some theoretical properties of Silvermanâs method for Smoothed functional principal component analysis
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2010
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Xin Qi
Hongyu Zhao
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PDF
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False Discovery Rate Control With Groups
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2010
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James X. Hu
Hongyu Zhao
Harrison H. Zhou
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PDF
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Asymptotic efficiency and finite-sample properties of the generalized profiling estimation of parameters in ordinary differential equations
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2009
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Xin Qi
Hongyu Zhao
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Nonparametric estimator of false discovery rate based on BernĹĄteÇn polynomials
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2008
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Zhong Zhen Guan
Baolin Wu
Hongyu Zhao
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PDF
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Practical guidelines for assessing power and false discovery rate for a fixed sample size in microarray experiments
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2008
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Tiejun Tong
Hongyu Zhao
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Parametric and Nonparametric FDR Estimation Revisited
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2006
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Baolin Wu
Zhong Zhen Guan
Hongyu Zhao
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+
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The Application of Bagging to Hybrid Adaptive Splines
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2005
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Hongyu Zhao
Mengyao Xiao
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+
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A stochastic modeling of early HIV-1 population dynamics
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2001
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Ayumi Kamina
Robert W. Makuch
Hongyu Zhao
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Test of Association for Quantitative Traits in General Pedigrees: The Quantitative Pedigree Disequilibrium Test
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2001
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Shuanglin Zhang
Kui Zhang
Jinming Li
Fengzhu Sun
Hongyu Zhao
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Relative Efficiencies of Ď2 Models of Recombination for Exclusion Mapping and Gene Ordering
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1995
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Darlene R. Goldstein
Hongyu Zhao
Terence P. Speed
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Correlation Curves as Local Measures of Variance Explained by Regression
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1994
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Kjell A. Doksum
Stephen Blyth
Eric T. Bradlow
XiaoâLi Meng
Hongyu Zhao
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