Matthew Smart

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All published works

Action	Title	Year	Authors
+ PDF Chat	A minimal dynamical system and analog circuit for non-associative learning	2024	Matthew Smart Stanislav Y. Shvartsman Martin Mönnigmann
+ PDF Chat	A model of replicating coupled oscillators generates naturally occurring cell networks	2023	Matthew Smart Stanislav Y. Shvartsman Hayden Nunley
+	Emergent properties of collective gene-expression patterns in multicellular systems	2023	Matthew Smart Anton Zilman
+	A model of replicating coupled oscillators generates naturally occurring cell networks	2023	Matthew Smart Stanislav Y. Shvartsman Hayden Nunley
+ PDF Chat	Pleiotropy enables specific and accurate signaling in the presence of ligand cross talk	2021	D. R. S. KIRBY Jeremy Rothschild Matthew Smart Anton Zilman
+	On the mapping between Hopfield networks and Restricted Boltzmann Machines	2021	Matthew Smart Anton Zilman
+	On the mapping between Hopfield networks and Restricted Boltzmann Machines	2021	Matthew Smart Anton Zilman
+	Effects of cross-talk and pleiotropy on the specificity and accuracy of receptor signaling	2019	D. R. S. KIRBY Jeremy Rothschild Matthew Smart Anton Zilman

Common Coauthors

Coauthor	Papers Together
Anton Zilman	5
Stanislav Y. Shvartsman	3
Jeremy Rothschild	2
D. R. S. KIRBY	2
Hayden Nunley	2
Martin Mönnigmann	1

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+	A high-bias, low-variance introduction to Machine Learning for physicists	2019	Pankaj Mehta Marin Bukov Ching-Hao Wang Alexandre G. R. Day Clint Richardson Charles K. Fisher David J. Schwab	3
+	None	2001	Radford M. Neal	2
+ PDF Chat	The Case for Absolute Ligand Discrimination: Modeling Information Processing and Decision by Immune T Cells	2016	Paul François Grégoire Altan‐Bonnet	2
+ PDF Chat	Thermodynamics of Statistical Inference by Cells	2014	Alex Lang Charles K. Fisher Thierry Mora Pankaj Mehta	2
+ PDF Chat	About the ergodic regime in the analogical Hopfield neural networks: Moments of the partition function	2008	Adriano Barra Francesco Guerra	2
+ PDF Chat	Physical Limit to Concentration Sensing Amid Spurious Ligands	2015	Thierry Mora	2
+ PDF Chat	Maximum Likelihood and the Single Receptor	2009	Robert G. Endres Ned S. Wingreen	2
+	Physics of chemoreception	1977	Howard C. Berg Edward M. Purcell	2
+ PDF Chat	Limits of Sensing Temporal Concentration Changes by Single Cells	2010	Thierry Mora Ned S. Wingreen	2
+	A Learning Algorithm for Boltzmann Machines*	1985	David H. Ackley Geoffrey E. Hinton Terrence J. Sejnowski	2
+ PDF Chat	Dynamics of Cooperativity in Chemical Sensing among Cell-Surface Receptors	2011	Monica Skoge Yigal Meir Ned S. Wingreen	2
+	Chemotaxis in Escherichia coli analysed by Three-dimensional Tracking	1972	Howard C. Berg Douglas A. Brown	2
+	Scikit-learn: Machine Learning in Python	2012	Fabián Pedregosa Gaël Varoquaux Alexandre Gramfort Vincent Michel Bertrand Thirion Olivier Grisel Mathieu Blondel Peter Prettenhofer Ron J. Weiss Vincent Dubourg	2
+ PDF Chat	On the equivalence of Hopfield networks and Boltzmann Machines	2012	Adriano Barra Alberto Bernacchia Enrica Santucci Pierluigi Contucci	2
+ PDF Chat	Physical limits to biochemical signaling	2005	William Bialek Sima Setayeshgar	2
+ PDF Chat	Bacterial chemotaxis: information processing, thermodynamics, and behavior	2015	Gabriele Micali Robert G. Endres	2
+ PDF Chat	Gaussian-binary restricted Boltzmann machines for modeling natural image statistics	2017	Jan Melchior Nan Wang Laurenz Wiskott	2
+ PDF Chat	Cell–cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis	2016	David Ellison Andrew Mugler Matthew Brennan Sung Hoon Lee Robert J. Huebner Eliah R. Shamir Laura Woo Joseph S. Kim Patrick Amar Ilya Nemenman	2
+ PDF Chat	Limits to the precision of gradient sensing with spatial communication and temporal integration	2016	Andrew Mugler Andre Levchenko Ilya Nemenman	2
+ PDF Chat	Mean-field message-passing equations in the Hopfield model and its generalizations	2017	Marc Mézard	2
+ PDF Chat	Receptor crosstalk improves concentration sensing of multiple ligands	2019	Martín Carballo‐Pacheco Jonathan Desponds Tatyana Gavrilchenko Andreas Mayer Roshan Prizak Gautam Reddy Ilya Nemenman Thierry Mora	2
+ PDF Chat	Universal Properties of Concentration Sensing in Large Ligand-Receptor Networks	2020	Vijay Singh Ilya Nemenman	2
+ PDF Chat	Identifying feasible operating regimes for early T-cell recognition: The speed, energy, accuracy trade-off in kinetic proofreading and adaptive sorting	2018	Wenping Cui Pankaj Mehta	2
+ PDF Chat	Epigenetic Landscapes Explain Partially Reprogrammed Cells and Identify Key Reprogramming Genes	2014	Alex Lang Hu Li James J. Collins Pankaj Mehta	1
+ PDF Chat	Traveling and Pinned Fronts in Bistable Reaction-Diffusion Systems on Networks	2012	Nikos E. Kouvaris Hiroshi Kori Alexander S. Mikhailov	1
+ PDF Chat	Molecular-Level Tuning of Cellular Autonomy Controls the Collective Behaviors of Cell Populations	2015	Théo Maire Hyun Youk	1
+	The Origin of Asymmetry: Early Polarisation of the Drosophila Germline Cyst and Oocyte	2004	Jean‐René Huynh Daniel St Johnston	1
+ PDF Chat	Master regulators as order parameters of gene expression states	2021	A. Krämer	1
+ PDF Chat	A unifying framework for mean-field theories of asymmetric kinetic Ising systems	2021	Miguel Aguilera S. Amin Moosavi Hideaki Shimazaki	1
+	Graph neural networks: A review of methods and applications	2020	Jie Zhou Ganqu Cui Shengding Hu Zhengyan Zhang Cheng Yang Zhiyuan Liu Lifeng Wang Changcheng Li Maosong Sun	1
+ PDF Chat	Quantifying cell transitions in C. elegans with data-fitted landscape models	2021	Elena Camacho-Aguilar Aryeh Warmflash D.A.J. Rand	1
+ PDF Chat	Weakly coupled map lattice models for multicellular patterning and collective normalization of abnormal single-cell states	2017	Vladimir Garcı́a-Morales José A. Manzanares Salvador Mafé	1
+ PDF Chat	What Is Your Conceptual Definition of “Cell Type” in the Context of a Mature Organism?	2017		1
+ PDF Chat	Cell cycle time series gene expression data encoded as cyclic attractors in Hopfield systems	2017	Anthony Szedlak Spencer Sims Nicholas H. Smith Giovanni Paternostro Carlo Piermarocchi	1
+ PDF Chat	Statistical Dynamics of Spatial-Order Formation by Communicating Cells	2018	Eduardo P. Olimpio Yiteng Dang Hyun Youk	1
+	Gene-free methodology for cell fate dynamics during development	2017	Francis Corson Eric D. Siggia	1
+	UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction	2018	Leland McInnes John J. Healy	1
+ PDF Chat	Geometry of gene regulatory dynamics	2021	D.A.J. Rand Archishman Raju Meritxell Sáez Francis Corson Eric D. Siggia	1
+ PDF Chat	Exact mean-field inference in asymmetric kinetic Ising systems	2011	Marc Mézard Jason Sakellariou	1
+	Biological timekeeping in the presence of stochasticity	2017	Farshid Jafarpour Michael Vennettilli Srividya Iyer‐Biswas	1
+ PDF Chat	Fluctuation Results for General Block Spin Ising Models	2020	Holger Knöpfel Matthias Löwe Kristina Schubert Arthur Sinulis	1
+ PDF Chat	Time-dependent corrections to effective rate and event statistics in Michaelis–Menten kinetics	2010	Nikolai A. Sinitsyn Ilya Nemenman	1
+ PDF Chat	Visualizing Energy Landscapes through Manifold Learning	2021	Benjamin W. B. Shires Chris J. Pickard	1
+	The free energy in a multi-species Sherrington–Kirkpatrick model	2015	Dmitry Panchenko	1
+ PDF Chat	Reducing a cortical network to a Potts model yields storage capacity estimates	2018	Michelangelo Naim Vezha Boboeva Chol Jun Kang Alessandro Treves	1
+ PDF Chat	Two Groups in a Curie–Weiss Model with Heterogeneous Coupling	2019	Werner Kirsch Gábor Tóth	1
+ PDF Chat	Efficiency of cellular information processing	2014	Andre C. Barato David Hartich Udo Seifert	1
+ PDF Chat	Conformational Proofreading: The Impact of Conformational Changes on the Specificity of Molecular Recognition	2007	Yonatan Savir Tsvi Tlusty	1
+ PDF Chat	Equilibrium statistical mechanics of bipartite spin systems	2011	Adriano Barra Giuseppe Genovese Francesco Guerra	1
+ PDF Chat	Multifarious assembly mixtures: Systems allowing retrieval of diverse stored structures	2014	Arvind Murugan Zorana Zeravcic Michael P. Brenner Stanislas Leibler	1