Gad Getz

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All published works

Action	Title	Year	Authors
+	Round Table Discussion on Optimal Clinical Trial Design in Precursor Multiple Myeloma	2024	Irene M. Ghobrial Nicole Gormley Shaji Kumar María‐Victoria Mateos P. Leif Bergsagel Marta Chesi Madhav V. Dhodapkar Angela Dispenzieri Rafaël Fonseca Gad Getz
+ PDF Chat	scDiffEq: drift-diffusion modeling of single-cell dynamics with neural stochastic differential equations	2023	Michael Vinyard A. Rasmussen Ruitong Li Allon M. Klein Gad Getz Luca Pinello
+	Abstract 5371: Modeling single-cell dynamics using stochastic generative models based on neural differential equations	2023	Michael Vinyard A. Rasmussen Ruitong Li Luca Pinello Gad Getz
+	Supplementary Figure 6 from Sensitive Detection of Minimal Residual Disease in Patients Treated for Early-Stage Breast Cancer	2023	Heather A. Parsons Justin Rhoades Sarah C. Reed Gregory Gydush Priyanka Ram Pedro Exman Kan Xiong Christopher Lo Tianyu Li Mark Fleharty
+	Supplementary Figure 11 from Sensitive Detection of Minimal Residual Disease in Patients Treated for Early-Stage Breast Cancer	2023	Heather A. Parsons Justin Rhoades Sarah C. Reed Gregory Gydush Priyanka Ram Pedro Exman Kan Xiong Christopher Lo Tianyu Li Mark Fleharty
+	Supplementary Figure 6 from Sensitive Detection of Minimal Residual Disease in Patients Treated for Early-Stage Breast Cancer	2023	Heather A. Parsons Justin Rhoades Sarah C. Reed Gregory Gydush Priyanka Ram Pedro Exman Kan Xiong Christopher Lo Tianyu Li Mark Fleharty
+	Supplementary Figure 11 from Sensitive Detection of Minimal Residual Disease in Patients Treated for Early-Stage Breast Cancer	2023	Heather A. Parsons Justin Rhoades Sarah C. Reed Gregory Gydush Priyanka Ram Pedro Exman Kan Xiong Christopher Lo Tianyu Li Mark Fleharty
+ PDF Chat	MITI minimum information guidelines for highly multiplexed tissue images	2022	Denis Schapiro Clarence Yapp Artem Sokolov Sheila M. Reynolds Chen Yuan Damir Sudar Yubin Xie Jeremy Muhlich Raquel Arias-Camison Sarah Arena
+ PDF Chat	Addendum: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity	2018	Jordi Barretina Giordano Caponigro Nicolas Stransky K. Venkatesan Adam A. Margolin Sung Joon Kim Christopher J. Wilson Joseph Lehár Gregory V. Kryukov Dmitriy Sonkin
+ PDF Chat	Tumor fraction in cell-free DNA as a biomarker in prostate cancer	2018	Atish D. Choudhury Lillian Werner Edoardo Francini Xiao X. Wei Gavin Ha Samuel S. Freeman Justin Rhoades Sarah C. Reed Gregory Gydush Denisse Rotem
+	An exact method to compute a $p$-value for the beyond-pairwise correlations among cancer gene mutations	2015	Jaegil Kim Atanas Kamburov Michal Lawrence Yosef E. Maruvka Gad Getz
+ PDF Chat	Addendum: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity	2012	Jordi Barretina Giordano Caponigro Nicolas Stransky K. Venkatesan Adam A. Margolin Sung Joon Kim Christopher J. Wilson Joseph Lehár Gregory V. Kryukov Dmitriy Sonkin
+ PDF Chat	High-order chromatin architecture determines the landscape of chromosomal alterations in cancer	2011	Geoffrey Fudenberg Gad Getz Matthew Meyerson Leonid A. Mirny
+	High-order chromatin architecture determines the landscape of chromosomal alterations in cancer	2011	Geoffrey Fudenberg Gad Getz Matthew Meyerson Leonid A. Mirny
+	High-order chromatin architecture determines the landscape of chromosomal alterations in cancer	2011	Geoffrey Fudenberg Gad Getz Matthew Meyerson Leonid A. Mirny
+	Comments on "Significance of candidate cancer genes as assessed by the CaMP score" by Parmigiani et al.	2007	Gad Getz Robert Tibshirani
+	Semi-Supervised Learning -- A Statistical Physics Approach	2006	Gad Getz Noam Shental Eytan Domany
+ PDF Chat	Gene expression analysis reveals a strong signature of an interferon-induced pathway in childhood lymphoblastic leukemia as well as in breast and ovarian cancer	2005	Uri Einav Yuval Tabach Gad Getz Assif Yitzhaky Uğur Özbek Ninette Amariglio Shai Izraeli Gideon Rechavi Eytan Domany
+	Gene expression analysis reveals a strong signature of an interferon induced pathway in childhood lymphoblastic leukemia as well as in breast and ovarian cancer	2005	Uri Einav Yuval Tabach Gad Getz Assif Yitzhaky Uğur Özbek Ninette Amariglio Shai Izraeli Gideon Rechavi Eytan Domany
+ PDF Chat	Design principle of gene expression used by human stem cells: implication for pluripotency	2004	Michal Golan‐Mashiach Jean‐Eudes Dazard Sharon Gerecht‐Nir Ninette Amariglio Tamar Fisher Jasmine Jacob‐Hirsch Bella Bielorai Sivan Osenberg Omer Barad Gad Getz
+ PDF Chat	Outcome signature genes in breast cancer: is there a unique set?	2004	Liat Ein‐Dor Itai Kela Gad Getz David Givol Eytan Domany
+	FSSP to SCOP and CATH (F2CS) Prediction Server	2004	Gad Getz Alina Starovolsky Eytan Domany
+	Outcome signature genes in breast cancer: is there a unique set?	2004	Liat Ein‐Dor Itai Kela Gad Getz David Givol Eytan Domany
+	Design Principle of Gene Expression Used by Human Stem Cells; Implication for Pluripotency	2004	Michal Golan‐Mashiach Jean‐Eudes Dazard Sharon Gerecht‐Nir Ninette Amariglio Tamar Fisher Jasmine Jacob‐Hirsch Bella Bielorai Sivan Osenberg Omer Barad Gad Getz
+ PDF Chat	Coupled two-way clustering analysis of breast cancer and colon cancer gene expression data	2003	Gad Getz Hilah Gal Itai Kela Daniel A. Notterman Eytan Domany
+	Expression profiles of acute lymphoblastic and myeloblastic leukemias with ALL-1 rearrangements	2003	Tanya Rozovskaia Osnat Ravid-Amir Sergei V. Tillib Gad Getz Elena Feinstein Himanshu Agrawal A. Nagler Eric Rappaport Irina Issaeva Yuichiro Matsuo
+	Coupled Two-Way Clustering Analysis of Breast Cancer and Colon Cancer Gene Expression Data	2002	Gad Getz Hilah Gal Itai Kela Eytan Domany Dan Notterman
+	Automated assignment of SCOP and CATH protein structure classification from FSSP scores	2001	Gad Getz Michele Vendruscolo David Sachs Eytan Domany
+	Coupled two-way clustering analysis of gene microarray data	2000	Gad Getz Erel Levine Eytan Domany
+ PDF Chat	Super-paramagnetic clustering of yeast gene expression profiles	2000	Gad Getz Erel Levine Eytan Domany M.Q. Zhang

Common Coauthors

Coauthor	Papers Together
Eytan Domany	14
Matthew Meyerson	11
Todd R. Golub	6
Nikhil Wagle	5
Heather A. Parsons	5
Justin Rhoades	5
Gavin Ha	5
Samuel S. Freeman	5
Daniel G. Stover	5
Ofir Cohen	5
Denisse Rotem	5
Atish D. Choudhury	5
Viktor A. Adalsteinsson	5
Sarah C. Reed	5
Gregory Gydush	5
Fangyan Yu	4
Kan Xiong	4
Priyanka Ram	4
Ninette Amariglio	4
Mark Fleharty	4
Nancy U. Lin	4
Erica L. Mayer	4
Wai Yie Leong	4
Matthew DeFelice	4
Gideon Rechavi	4
Ann H. Partridge	4
Christopher Lo	4
Lorenzo Trippa	4
Ian E. Krop	4
Tianyu Li	4
Eric P. Winer	4
Donna Neuberg	4
David Givol	4
Melissa E. Hughes	4
Mariana Fitarelli-Kiehl	4
Pedro Exman	4
Carrie Cibulskis	4
Niall J. Lennon	4
Gregory J. Kirkner	4
Brendan Blumenstiel	4
G. Mike Makrigiorgos	4
Itai Kela	4
Shoshana M. Rosenberg	4
Laura C. Collins	4
Kathy D. Miller	4
J. Christopher Love	3
Geoffrey Fudenberg	3
Leonid A. Mirny	3
Jean‐Eudes Dazard	2
Jodi Meltzer	2

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+	Coupled two-way clustering analysis of gene microarray data	2000	Gad Getz Erel Levine Eytan Domany	4
+	Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing	1995	Yoav Benjamini Yosef Hochberg	4
+ PDF Chat	Resampling Method for Unsupervised Estimation of Cluster Validity	2001	Erel Levine Eytan Domany	2
+ PDF Chat	Super-paramagnetic clustering of yeast gene expression profiles	2000	Gad Getz Erel Levine Eytan Domany M.Q. Zhang	2
+	Development of an Integrated Prostate Cancer Research Information System	2006	William Oh J. D. Hayes Carolyn Evan Judith Manola Daniel J. George Helen Waldron Meaghan Donovan John Varner John A. Orechia Beth Katcher	1
+ PDF Chat	Introduction to Probability and Random Variables	1961	George P. Wadsworth Jordan Bryan A. Cemal Eringen	1
+	Cluster Monte Carlo algorithms	1990	Jian‐Sheng Wang Robert H. Swendsen	1
+ PDF Chat	EXTENDED ENSEMBLE MONTE CARLO	2001	Yukito Iba	1
+	Empirical bayes methods and false discovery rates for microarrays	2002	Bradley Efron Robert Tibshirani	1
+	Cancer as an evolutionary and ecological process	2006	Lauren M.F. Merlo John W. Pepper Brian J. Reid Carlo C. Maley	1
+	Expression profiles of acute lymphoblastic and myeloblastic leukemias with ALL-1 rearrangements	2003	Tanya Rozovskaia Osnat Ravid-Amir Sergei V. Tillib Gad Getz Elena Feinstein Himanshu Agrawal A. Nagler Eric Rappaport Irina Issaeva Yuichiro Matsuo	1
+ PDF Chat	Multicanonical ensemble: A new approach to simulate first-order phase transitions	1992	Bernd A. Berg Thomas Neuhaus	1
+ PDF Chat	Estimating the Dimension of a Model	1978	Gideon Schwarz	1
+ PDF Chat	The human body at cellular resolution: the NIH Human Biomolecular Atlas Program	2019	M Snyder Shin Lin Amanda L. Posgai Mark A. Atkinson Aviv Regev Jennifer Rood Orit Rozenblatt–Rosen Leslie Gaffney Anna Hupalowska Rahul Satija	1
+ PDF Chat	Dataset search in biodiversity research: Do metadata in data repositories reflect scholarly information needs?	2021	Felicitas Löffler Valentin Wesp Birgitta König‐Ries Friederike Klan	1
+	A Global View of Standards for Open Image Data Formats and Repositories	2020	Jason R. Swedlow Pasi Kankaanpää Uğis Sarkans Wojtek Goscinski Graham J. Galloway Ryan P. Sullivan Claire M. Brown Chris Wood Antje Keppler Ben Loos	1
+ PDF Chat	Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases	2019	Marcos Martínez-Romero Martin J. O’Connor Attila L. Egyedi Debra Willrett Josef Hardi John Graybeal Mark A. Musen	1
+ PDF Chat	Guidelines for reporting single-cell RNA-seq experiments	2020	Anja Füllgrabe Nancy George Matthew Green Parisa Nejad Bruce J. Aronow Silvie Fexová Clay Fischer Mallory Freeberg Laura Huerta Norman Morrison	1
+ PDF Chat	A global view of standards for open image data formats and repositories	2021	Jason R. Swedlow Pasi Kankaanpää Uğis Sarkans Wojtek Goscinski Graham J. Galloway Leonel Malacrida Ryan P. Sullivan Steffen Härtel Claire M. Brown Christopher D. Wood	1
+	The Clonal Evolution of Tumor Cell Populations	1976	Peter C. Nowell̀	1
+ PDF Chat	QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy	2021	Glyn Nelson Ulrike Boehm Steve Bagley Peter Bajcsy Johanna Bischof Claire M. Brown Aurélien Dauphin Ian M. Dobbie John Eriksson Orestis Faklaris	1
+ PDF Chat	The linear process of somatic evolution	2003	Martin A. Nowak Franziska Michor Yoh Iwasa	1
+	An Introduction to the Bootstrap	1994	Bradley Efron Robert Tibshirani	1
+	Superparamagnetic clustering of data	1998	Shai Wiseman Marcelo Blatt Eytan Domany	1