Estimation of Unreported Novel Coronavirus (SARS-CoV-2) Infections from Reported Deaths: A Susceptible–Exposed–Infectious–Recovered–Dead Model

Type: Article

Publication Date: 2020-05-05

Citations: 55

DOI: https://doi.org/10.3390/jcm9051350

View Chat PDF

Abstract

In the midst of the novel coronavirus (SARS-CoV-2) epidemic, examining reported case data could lead to biased speculations and conclusions. Indeed, estimation of unreported infections is crucial for a better understanding of the current emergency in China and in other countries. In this study, we aimed to estimate the unreported number of infections in China prior to the 23 January 2020 restrictions. To do this, we developed a Susceptible–Exposed–Infectious–Recovered–Dead (SEIRD) model that estimated unreported infections from the reported number of deaths. Our approach relied on the fact that observed deaths were less likely to be affected by ascertainment biases than reported infections. Interestingly, we estimated that the basic reproductive number (R0) was 2.43 (95%CI = 2.42–2.44) at the beginning of the epidemic and that 92.9% (95%CI = 92.5%–93.1%) of total cases were not reported. Similarly, the proportion of unreported new infections by day ranged from 52.1% to 100%, with a total of 91.8% (95%CI = 91.6%–92.1%) of infections going unreported. Agreement between our estimates and those from previous studies proves that our approach is reliable for estimating the prevalence and incidence of undocumented SARS-CoV-2 infections. Once it has been tested on Chinese data, our model could be applied to other countries with different surveillance and testing policies.

Locations

  • Journal of Clinical Medicine - View - PDF
  • PubMed Central - View
  • Europe PMC (PubMed Central) - View - PDF
  • DOAJ (DOAJ: Directory of Open Access Journals) - View
  • PubMed - View

Similar Works

Action Title Year Authors
+ Estimation of Unreported Novel Coronavirus (SARS-CoV-2) Infections from Reported Deaths: a Susceptible Exposed Infectious Recovered Dead Model 2020 Andrea Maugeri
Martina Barchitta
Sebastiano Battiato
Antonella Agodi
+ Real-Time Estimation of the Risk of Death from Novel Coronavirus (COVID-19) Infection: Inference Using Exported Cases 2020 Sung-mok Jung
Andrei R. Akhmetzhanov
Katsuma Hayashi
Natalie M. Linton
Yichi Yang
Baoyin Yuan
T. Kobayashi
Ryo Kinoshita
Hiroshi Nishiura
+ PDF Chat Real-Time Estimation of the Risk of Death from Novel Coronavirus (COVID-19) Infection: Inference Using Exported Cases 2020 Sung-mok Jung
Andrei R. Akhmetzhanov
Katsuma Hayashi
Natalie M. Linton
Yichi Yang
Baoyin Yuan
T. Kobayashi
Ryo Kinoshita
Hiroshi Nishiura
+ PDF Chat Early estimation of the case fatality rate of COVID-19 in mainland China: a data-driven analysis 2020 Shu Yang
Peihua Cao
Peipei Du
Ziting Wu
Zian Zhuang
Lin Yang
Xuan Yu
Qi Zhou
Xixi Feng
Xiaohui Wang
+ Risk estimation and prediction by modeling the transmission of the novel coronavirus (COVID-19) in mainland China excluding Hubei province 2020 Hui Wan
Jinǵan Cui
Guo-Jing Yang
+ PDF Chat Risk estimation of the SARS-CoV-2 acute respiratory disease outbreak outside China 2020 Soyoung Kim
Sunhwa Choi
Youngsuk Ko
Moran Ki
Eunok Jung
+ The effectiveness of quarantine and isolation determine the trend of the COVID-19 epidemics in the final phase of the current outbreak in China 2020 Biao Tang
Fan Xia
Sanyi Tang
Nicola Luigi Bragazzi
Qian Li
Xiaodan Sun
Juhua Liang
Yanni Xiao
Jian Wu
+ The Evolution of Quarantined and Suspected Cases Determines the Final Trend of the 2019-nCoV Epidemics Based on Multi-Source Data Analyses 2020 Biao Tang
Fan Xia
Sanyi Tang
Nicola Luigi Bragazzi
Qian Li
Xiaodan Sun
Juhua Liang
Yanni Xiao
Jian Wu
+ PDF Chat Risk estimation and prediction of the transmission of coronavirus disease-2019 (COVID-19) in the mainland of China excluding Hubei province 2020 Hui Wan
Jing-An Cui
Guo-Jing Yang
+ PDF Chat The effectiveness of quarantine and isolation determine the trend of the COVID-19 epidemic in the final phase of the current outbreak in China 2020 Biao Tang
Fan Xia
Sanyi Tang
Nicola Luigi Bragazzi
Qian Li
Xiaodan Sun
Juhua Liang
Yanni Xiao
Jian Wu
+ PDF Chat Estimating the Unreported Number of Novel Coronavirus (2019-nCoV) Cases in China in the First Half of January 2020: A Data-Driven Modelling Analysis of the Early Outbreak 2020 Shi Zhao
Salihu S. Musa
Qianying Lin
Jinjun Ran
Guangpu Yang
Weiming Wang
Yijun Lou
Lin Yang
Daozhou Gao
Daihai He
+ PDF Chat What Can We Estimate From Fatality and Infectious Case Data Using the Susceptible-Infected-Removed (SIR) Model? A Case Study of Covid-19 Pandemic 2020 Semra Ahmetolan
Ayşe Hümeyra Bilge
Ali Demirci
Ayşe Peker-Dobie
Önder Ergönül
+ Estimation of unreported SARS-CoV-2 cases in Italy using a Susceptible-Exposed-Infectious-Recovered-Dead model. 2020 Andrea Maugeri
Martina Barchitta
Sebastiano Battiato
Antonella Agodi
+ What Can We Estimate from Fatality and Infectious Case Data using the Susceptible-Infected-Removed (SIR) model? A case Study of Covid-19 Pandemic 2020 Semra Ahmetolan
Ayşe Hümeyra Bilge
Ali Demirci
Ayşe Peker-Dobie
Önder Ergönül
+ What Can We Estimate from Fatality and Infectious Case Data using the Susceptible-Infected-Removed (SIR) model? A case Study of Covid-19 Pandemic 2020 Semra Ahmetolan
Ayşe Hümeyra Bilge
Ali Demirci
Ayşe Peker-Dobie
Önder Ergönül
+ PDF Chat Reducing barriers to accessing administrative data on SARS-CoV-2 vaccination for research 2022 Andrew D. McRae
Patrick Archambault
Patrick T. Fok
Hana Wiemer
Laurie J. Morrison
Matthew Herder
+ Full-spectrum dynamics of the coronavirus disease outbreak in Wuhan, China: a modeling study of 32,583 laboratory-confirmed cases 2020 Xingjie Hao
Shanshan Cheng
Degang Wu
Tangchun Wu
Xihong Lin
Chaolong Wang
+ PDF Chat COVID-19 PREDICTION IN SOUTH AFRICA: ESTIMATING THE UNASCERTAINED CASES- THE HIDDEN PART OF THE EPIDEMIOLOGICAL ICEBERG 2020 Xuelin Gu
Bhramar Mukherjee
Sonali Das
Jyotishka Datta
+ PDF Chat Understanding Unreported Cases in the COVID-19 Epidemic Outbreak in Wuhan, China, and the Importance of Major Public Health Interventions 2020 Zhihua Liu
Pierre Magal
Ousmane Seydi
Glenn F. Webb
+ Prediction of SARS-CoV-2 infection cases based on the meta-SEIRS model 2024 Wenhui Zhu
Xuefeng Tang
Ying Chen
Miaoshuang Chen
Xinyue Han
Yuhuan Xie
Qiang Lv
Rongjie Wei
Dingzi Zhou
Changhong Yang

Cited by (43)

Action Title Year Authors
+ Influence of isolation measures for patients with mild symptoms on the spread of COVID-19 2020 Qiuhui Pan
Ting Gao
Mingfeng He
+ PDF Chat Estimating the daily trend in the size of the COVID-19 infected population in Wuhan 2020 Qiu-Shi Lin
Taojun Hu
Xiao‐Hua Zhou
+ Mathematical Modelling of the Impact of Non-Pharmacological Strategies to Control the COVID-19 Epidemic in Portugal 2021 Constantino Caetano
M. Luísa Morgado
Paula Patrício
João F. Pereira
Baltazar Nunes
+ The impact of traffic control measures on the spread of COVID-19 within urban agglomerations based on a modified epidemic model 2023 Wang Xiang
Li Chen
Xuedong Yan
Bin Wang
X. Liu
+ On Explicit Solution to the Seird Epidemic Model 2023 Norio Yoshida
+ Estimating the undetected infections in the Covid-19 outbreak by harnessing capture–recapture methods 2020 Dankmar Böhning
Irene Rocchetti
Antonello Maruotti
Heinz Holling
+ Prediction and Analysis of Tourist Management Strategy Based on the SEIR Model during the COVID-19 Period 2021 Yongdong Shi
Rongsheng Huang
Hanwen Cui
+ Modeling of the Long-Term Epidemic Dynamics of COVID-19 in the United States 2021 Derek Huang
Huanyu Tao
Qilong Wu
Sheng‐You Huang
Yi Xiao
+ How efficient is contact tracing in mitigating the spread of COVID-19? a mathematical modeling approach 2021 T. A. Biala
Yusuf O. Afolabi
A.Q.M. Khaliq
+ PDF Chat Estimating Case Fatality and Case Recovery Rates of COVID-19: is this the right thing to do? 2021 Morteza Abdullatif Khafaie
Fakher Rahim
+ Simulating and Predicting the Active Cases and Hospitalization Considering the Second Wave of COVID-19 2021 Shaon Bhatta Shuvo
Bonaventure C. Molokwu
Samaneh Rostami
Ziad Kobti
Anne Snowdon
+ A robust nonlinear mixed-effects model for COVID-19 death data 2020 Fernanda L. Schumacher
Clécio S. Ferreira
Marcos O. Prates
Alberto Lachos Dávila
Víctor H. Lachos
+ Human activity pattern implications for modeling SARS-CoV-2 transmission 2020 Yulan Wang
Bernard Li
Ramkiran Gouripeddi
Julio C. Facelli
+ Mathematical modelling based study and prediction of COVID-19 epidemic dissemination under the impact of lockdown in India 2020 Vipin Tiwari
Namrata Deyal
Nandan S. Bisht
+ PDF Chat Estimation of novel coronavirus (<scp>COVID</scp>‐19) reproduction number and case fatality rate: A systematic review and meta‐analysis 2021 Tanvir Ahammed
Aniqua Anjum
Mohammad Meshbahur Rahman
Najmul Haider
Richard Kock
Md Jamal Uddin
+ PDF Chat Using viral genomics to estimate undetected infections and extent of superspreading events for COVID-19 2020 Lucy M. Li
Patrick Ayscue
+ PDF Chat Assessing the short-run effects of lockdown policies on economic activity, with an application to the Santiago Metropolitan Region, Chile 2021 Constanza Fosco
Felipe Zurita
+ PDF Chat Different Patterns of the SARS-CoV-2 Epidemic across Italian Regions: a Hierarchical Clustering on Principal Components approach 2020 Andrea Maugeri
Martina Barchitta
Guido Basile
Antonella Agodi
+ PDF Chat A Clustering Approach to Classify Italian Regions and Provinces Based on Prevalence and Trend of SARS-CoV-2 Cases 2020 Andrea Maugeri
Martina Barchitta
Antonella Agodi
+ Estimation of novel coronavirus (covid-19) reproduction number and case fatality rate: a systematic review and meta-analysis 2020 Tanvir Ahammed
Aniqua Anjum
Mohammad Meshbahur Rahman
Najmul Haider
Richard Kock
Md Jamal Uddin
+ PDF Chat Mathematical Modeling Based Study and Prediction of COVID-19 Epidemic Dissemination Under the Impact of Lockdown in India 2020 Vipin Tiwari
Namrata Deyal
Nandan S. Bisht
+ PDF Chat Modeling the Novel Coronavirus (SARS-CoV-2) Outbreak in Sicily, Italy 2020 Andrea Maugeri
Martina Barchitta
Sebastiano Battiato
Antonella Agodi
+ Estimation of unreported SARS-CoV-2 cases in Italy using a Susceptible-Exposed-Infectious-Recovered-Dead model 2020 Andrea Maugeri
Martina Barchitta
Sebastiano Battiato
Antonella Agodi
+ Estimation of Unreported Novel Coronavirus (SARS-CoV-2) Infections from Reported Deaths: a Susceptible Exposed Infectious Recovered Dead Model 2020 Andrea Maugeri
Martina Barchitta
Sebastiano Battiato
Antonella Agodi
+ COVID-ABS: An agent-based model of COVID-19 epidemic to simulate health and economic effects of social distancing interventions 2020 Petrônio Cândido de Lima e Silva
Paulo Vitor do Carmo Batista
Hélder Seixas Lima
Marcos Antônio Alves
Frederico Gadelha Guimarães
Rodrigo Silva
+ A new model of unreported COVID-19 cases outperforms three known epidemic-growth models in describing data from Cuba and Spain 2021 Erick Eduardo Ramirez-Torres
Antonio Rafael Selva Castañeda
L. Rández
Luis E. Valdés García
Luis Enrique Bergues Cabrales
Scott A. Sisson
J.I. Montijano
+ PDF Chat Investigating the Dark Figure of COVID-19 Cases in Austria: Borrowing From the Decode Genetics Study in Iceland 2020 Rainer Hirk
Gregor Kastner
Laura Vana
+ Estimating Case Fatality Rate of Symptomatic Patients with COVID-19: Is This the Right Thing to Do? 2020 Morteza Abdullatif Khafaie
Fakher Rahim
+ PDF Chat Exploring Local Dynamics of COVID-19 in Italy: Local Labour Markets and the Cases of Bergamo and Brescia 2021 Marco Lomuscio
+ Why did COVID-19 affect some cities more than others? Insights from Brazil before vaccination 2024 Juan Pablo Chauvin
+ Estimation of unreported SARS-CoV-2 cases in Italy using a Susceptible-Exposed-Infectious-Recovered-Dead model. 2020 Andrea Maugeri
Martina Barchitta
Sebastiano Battiato
Antonella Agodi
+ Nonlinear Mixed Models and Related Approaches in Infectious Disease modeling: A Systematic and Critical Review 2024 Olaiya Mathilde Adéoti
Schadrac C. Agbla
Aliou Diop
Romain Glèlè Kakaï
+ PDF Chat Applying a hierarchical clustering on principal components approach to identify different patterns of the SARS-CoV-2 epidemic across Italian regions 2021 Andrea Maugeri
Martina Barchitta
Guido Basile
Antonella Agodi
+ Modelling the SARS-CoV-2 vaccination campaign in Italy: the fundamental role of unreported cases 2022 M. Traini
Carla Caponi
+ Hybrid modelling and simulation of the effect of vaccination on the COVID-19 transmission 2022 Anastasia Angelopoulou
Konstantinos Mykoniatis
+ PDF Chat “Mass gathering events and COVID-19 transmission in Borriana (Spain): A retrospective cohort study” 2021 Salvador Domènech-Montoliu
María Rosario Pac-Sa
Paula Vidal-Utrillas
Marta Latorre-Poveda
Alba Del Rio-González
Sara Ferrando-Rubert
Gema Ferrer-Abad
Manuel Sánchez-Urbano
Laura Aparisi-Esteve
Gema Badenes-Marques
+ PDF Chat Activity-based epidemic propagation and contact network scaling in auto-dependent metropolitan areas 2021 Nishant Kumar
Jimi Oke
Bat-hen Nahmias–Biran
+ Why Does COVID-19 Affect Some Cities More than Others?: Evidence from the First Year of the Pandemic in Brazil 2021 Juan Pablo Chauvin
+ Truncation data analysis for the under-reporting probability in COVID-19 pandemic 2021 Wei Liang
Hongsheng Dai
Marialuisa Restaino
+ Mathematical modeling of COVID-19 pandemic in the context of sub-Saharan Africa: a short-term forecasting in Cameroon and Gabon 2022 Cedric Hameni Nkwayep
Samuel Bowong
Berge Tsanou
M. A. Aziz-Alaoui
Jürgen Kurths

Citing (15)

Action Title Year Authors
+ Reproduction numbers of infectious disease models 2017 P. van den Driessche
+ PDF Chat Novel coronavirus 2019-nCoV: early estimation of epidemiological parameters and epidemic predictions 2020 Jonathan M. Read
Jessica R. E. Bridgen
Derek A. T. Cummings
Antonia Ho
Chris Jewell
+ PDF Chat Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study 2020 Joseph T. Wu
Kathy Leung
GM Leung
+ Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia 2020 Qun Li
Xuhua Guan
Peng Wu
Xiaoye Wang
Lei Zhou
Yeqing Tong
Ruiqi Ren
Kathy Leung
Eric H. Y. Lau
Jessica Y. Wong
+ Pattern of early human-to-human transmission of Wuhan 2019 novel coronavirus (2019-nCoV), December 2019 to January 2020 2020 Julien Riou
Christian L. Althaus
+ PDF Chat Estimating the Unreported Number of Novel Coronavirus (2019-nCoV) Cases in China in the First Half of January 2020: A Data-Driven Modelling Analysis of the Early Outbreak 2020 Shi Zhao
Salihu S. Musa
Qianying Lin
Jinjun Ran
Guangpu Yang
Weiming Wang
Yijun Lou
Lin Yang
Daozhou Gao
Daihai He
+ PDF Chat Risk for Transportation of Coronavirus Disease from Wuhan to Other Cities in China 2020 Zhanwei Du
Lin Wang
Simon Cauchemez
Xiao-Ke Xu
Xianwen Wang
Benjamin J. Cowling
Lauren Ancel Meyers
+ PDF Chat Phase-adjusted estimation of the number of Coronavirus Disease 2019 cases in Wuhan, China 2020 Huwen Wang
Zezhou Wang
Yinqiao Dong
Ruijie Chang
Chen Xu
Xiaoyue Yu
Shuxian Zhang
Lhakpa Tsamlag
Meili Shang
Jinyan Huang
+ Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (COVID-19) 2020 Ruiyun Li
Sen Pei
Бин Чэн
Yimeng Song
Tao Zhang
Wan Yang
Jeffrey Shaman
+ PDF Chat Risk Assessment of Novel Coronavirus COVID-19 Outbreaks Outside China 2020 Péter Boldog
Tamás Tekeli
Zsolt Vizi
Attila Dénes
Ferenc A. Bartha
Gergely Röst
+ Risk Assessment of Novel Coronavirus COVID-19 Outbreaks Outside China 2020 Péter Boldog
Tamás Tekeli
Zsolt Vizi
Attila Dénes
Ferenc A. Bartha
Gergely Röst
+ PDF Chat Early dynamics of transmission and control of COVID-19: a mathematical modelling study 2020 Adam J. Kucharski
Timothy Russell
Charlie Diamond
Yang Liu
John Edmunds
Sebastian Funk
Rosalind M. Eggo
Fiona Sun
Mark Jit
James D. Munday
+ Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (SARS-CoV-2) 2020 Ruiyun Li
Sen Pei
Бин Чэн
Yimeng Song
Zhang Tao
Wan Yang
Jeffrey Shaman
+ Risk for Transportation of 2019 Novel Coronavirus Disease from Wuhan to Other Cities in China 2020 Zhanwei Du
Lin Wang
Simon Cauchemez
Xiao-Ke Xu
Xianwen Wang
Benjamin J. Cowling
Lauren Ancel Meyers
+ Novel coronavirus 2019-nCoV (COVID-19): early estimation of epidemiological parameters and epidemic size estimates 2021 Jonathan M. Read
Jessica R. E. Bridgen
Derek A. T. Cummings
Antonia Ho
Chris Jewell