A $4,000 Workstation for Mammalian Genome Assembly with Long Reads

Type: Preprint

Publication Date: 2017-01-01

Citations: 0

DOI: https://doi.org/10.48550/arxiv.1703.10231

Locations

  • arXiv (Cornell University) - View - PDF
  • DataCite API - View

Similar Works

Action Title Year Authors
+ Genome assembly in the telomere-to-telomere era 2023 Heng Li
Richard Durbin
+ Extreme-Scale De Novo Genome Assembly 2017 Evangelos Georganas
Steven Hofmeyr
Rob Egan
Aydın Buluç
Leonid Oliker
Daniel S. Rokhsar
Katherine Yelick
+ Distributed-Memory Parallel Contig Generation for De Novo Long-Read Genome Assembly 2022 Giulia Guidi
Gabriel Raulet
Daniel S. Rokhsar
Leonid Oliker
Katherine Yelick
Aydın Buluç
+ PDF Chat Technology dictates algorithms: recent developments in read alignment 2021 Mohammed Alser
Jeremy Rotman
Dhrithi Deshpande
Kodi Taraszka
Huwenbo Shi
Pelin Icer Baykal
Harry Taegyun Yang
Victor Xue
Sergey Knyazev
Benjamin D. Singer
+ PDF Chat DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies 2016 Chengxi Ye
C. Hill
Shigang Wu
Jue Ruan
Zhanshan Ma
+ Technology dictates algorithms: Recent developments in read alignment 2020 Mohammed Alser
Jeremy Rotman
Kodi Taraszka
Huwenbo Shi
Pelin Icer Baykal
Harry Taegyun Yang
Victor Xue
Sergey Knyazev
Benjamin D. Singer
Brunilda Balliu
+ Technology dictates algorithms: Recent developments in read alignment 2020 Mohammed Alser
Jeremy Rotman
Kodi Taraszka
Huwenbo Shi
Pelin Icer Baykal
Harry Taegyun Yang
Victor Xue
Sergey Knyazev
Benjamin D. Singer
Brunilda Balliu
+ Bermuda: Bidirectional de novo assembly of transcripts with new insights for handling uneven coverage 2015 Qingming Tang
Sheng Wang
Jian Peng
Jianzhu Ma
Jinbo Xu
+ Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph 2023 Haoyu Cheng
Mobin Asri
Julian Lucas
Sergey Koren
Heng Li
+ Memory Efficient De Bruijn Graph Construction 2012 Yang Li
Pegah Kamousi
Fangqiu Han
Shengqi Yang
Xifeng Yan
Subhash Suri
+ PDF Chat Minimum error correction-based haplotype assembly: Considerations for long read data 2020 Sina Majidian
Mohammad Hossein Kahaei
Dick de Ridder
+ PDF Chat A composite genome approach to identify phylogenetically informative data from next-generation sequencing 2015 Rachel S. Schwartz
Kelly M. Harkins
Anne C. Stone
Reed A. Cartwright
+ SparseAssembler2: Sparse k-mer Graph for Memory Efficient Genome Assembly 2011 Chengxi Ye
Charles H. Cannon
Zhanshan Sam
Douglas W. Yu
Mihai Pop
+ Fast and accurate alignment of long bisulfite-seq reads 2014 Brent S. Pedersen
Kenneth R. Eyring
Subhajyoti De
Ivana V. Yang
David A. Schwartz
+ A comprehensive overview of computational tools for RNA-seq analysis 2020 Dhrithi Deshpande
Karishma Chhugani
Yutong Chang
Aaron Karlsberg
Caitlin Loeffler
Jinyang Zhang
Agata Muszyńska
Jeremy Rotman
Laura Tao
Lana S. Martin
+ PDF Chat FSG: Fast String Graph Construction for De Novo Assembly of Reads Data 2016 Paola Bonizzoni
Gianluca Della Vedova
Yuri Pirola
Marco Previtali
Raffaella Rizzi
+ Scalable De Novo Genome Assembly Using Pregel 2018 Da Yan
Hongzhi Chen
James Cheng
Zhenkun Cai
Bin Shao
+ PDF Chat Chromosome-scale shotgun assembly using an in vitro method for long-range linkage 2016 Nicholas H. Putnam
Brendan L. O′Connell
Jonathan C. Stites
Brandon Rice
Marco Blanchette
Robert Calef
Christopher J. Troll
Andrew J. Fields
Paul D. Hartley
Charles W. Sugnet
+ Compression of next-generation sequencing reads aided by highly efficient de novo assembly 2012 Daniel C. Jones
Walter L. Ruzzo
Xinxia Peng
Michael G. Katze
+ SparseAssembler2: Sparse k-mer Graph for Memory Efficient Genome Assembly 2011 Chengxi Ye
Charles H. Cannon
Zhanshan Sam
Douglas W. Yu
Mihai Pop

Works That Cite This (0)

Action Title Year Authors

Works Cited by This (0)

Action Title Year Authors