Vincenzo Carnevale

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All published works

Action	Title	Year	Authors
+ PDF Chat	Lipid-mediated hydrophobic gating in the BK potassium channel.	2024	Lucia Coronel Giovanni Di Muccio Brad S. Rothberg Alberto Giacomello Vincenzo Carnevale
+ PDF Chat	Ion Channels in Critical Membranes: Clustering, Cooperativity, and Memory Effects	2024	Antonio Suma Daniel Sigg Séamus Gallagher Giuseppe Gonnella Vincenzo Carnevale
+	Ion channels in critical membranes: clustering, cooperativity, and memory effects	2024	Antonio Suma D. Sigg Séamus Gallagher Giuseppe Gonnella Vincenzo Carnevale
+ PDF Chat	Nonequilibrium Thermodynamics of DNA Nanopore Unzipping	2023	Antonio Suma Vincenzo Carnevale Cristian Micheletti
+	Nonequilibrium thermodynamics of DNA nanopore unzipping	2022	Antonio Suma Vincenzo Carnevale Cristian Micheletti
+ PDF Chat	The generative capacity of probabilistic protein sequence models	2021	Francisco McGee Sandro Hauri Quentin Novinger Slobodan Vučetić Ronald M. Levy Vincenzo Carnevale Allan Haldane
+ PDF Chat	Generative Capacity of Probabilistic Protein Sequence Models	2021	Francisco McGee Quentin Novinger Ronald M. Levy Vincenzo Carnevale Allan Haldane
+ PDF Chat	Particle-based Ising model	2021	Quentin Novinger Antonio Suma Daniel Sigg Giuseppe Gonnella Vincenzo Carnevale
+ PDF Chat	Microcanonical coarse-graining of the kinetic Ising model	2020	Daniel Sigg Vincent A. Voelz Vincenzo Carnevale
+ PDF Chat	Convergent Dynamics in the Protease Enzymatic Superfamily	2006	Vincenzo Carnevale Simone Raugei Cristian Micheletti Paolo Carloni

Common Coauthors

Coauthor	Papers Together
Antonio Suma	5
Giuseppe Gonnella	3
Quentin Novinger	3
Daniel Sigg	3
Cristian Micheletti	3
Séamus Gallagher	2
Allan Haldane	2
Francisco McGee	2
Ronald M. Levy	2
Alberto Giacomello	1
Giovanni Di Muccio	1
Lucia Coronel	1
D. Sigg	1
Paolo Carloni	1
Brad S. Rothberg	1
Sandro Hauri	1
Slobodan Vučetić	1
Vincent A. Voelz	1
Simone Raugei	1

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+	Exact stochastic simulation of coupled chemical reactions	1977	Daniel T. Gillespie	3
+	Pre-transition effects mediate forces of assembly between transmembrane proteins	2016	Shachi Katira Kranthi K. Mandadapu Suriyanarayanan Vaikuntanathan Berend Smit David Chandler	2
+ PDF Chat	Mutation effects predicted from sequence co-variation	2017	Thomas A. Hopf John Ingraham Frank J. Poelwijk Charlotta Schärfe Michael Springer Chris Sander Debora S. Marks	2
+	Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties	2001	Jianqing Fan Runze Li	2
+ PDF Chat	Coevolutionary Landscape Inference and the Context-Dependence of Mutations in Beta-Lactamase TEM-1	2015	Matteo Figliuzzi Hervé Jacquier Alexander Schug Olivier Tenaillon Martin Weigt	2
+ PDF Chat	Selection of sequence motifs and generative Hopfield-Potts models for protein families	2019	Kai Shimagaki Martin Weigt	2
+ PDF Chat	Weak pairwise correlations imply strongly correlated network states in a neural population	2006	Elad Schneidman Michael J. Berry Ronen Segev William Bialek	2
+	Rediscovering the power of pairwise interactions	2007	William Bialek Rama Ranganathan	2
+	Variational auto-encoding of protein sequences	2017	Sam Sinai Eric D. Kelsic George M. Church Martin A. Nowak	2
+	ProGen: Language Modeling for Protein Generation	2020	Ali Madani Bryan McCann Nikhil Naik Nitish Shirish Keskar Namrata Anand Raphael R. Eguchi Po‐Ssu Huang Richard Socher	2
+ PDF Chat	How Pairwise Coevolutionary Models Capture the Collective Residue Variability in Proteins?	2018	Matteo Figliuzzi Pierre Barrat-Charlaix Martin Weigt	2
+	Variational Autoencoders with Riemannian Brownian Motion Priors	2020	Dimitrios Kalatzis David Eklund Georgios Arvanitidis Søren Hauberg	2
+ PDF Chat	Guided Variational Autoencoder for Disentanglement Learning	2020	Zheng Ding Yifan Xu Weijian Xu Gaurav Parmar Yang Yang Max Welling Zhuowen Tu	2
+	The Usual Suspects? Reassessing Blame for VAE Posterior Collapse	2020	Bin Dai Ziyu Wang David Wipf	2
+	BERTology Meets Biology: Interpreting Attention in Protein Language Models	2020	Jesse Vig Ali Madani Lav R. Varshney Caiming Xiong Richard Socher Nazneen Fatema Rajani	2
+	Stochastic Backpropagation and Approximate Inference in Deep Generative Models	2014	Danilo Jimenez Rezende Shakir Mohamed Daan Wierstra	2
+	Escaping free-energy minima	2002	Alessandro Laio Michele Parrinello	2
+ PDF Chat	Inverse statistical physics of protein sequences: a key issues review	2017	Simona Cocco Christoph Feinauer Matteo Figliuzzi Rémi Monasson Martin Weigt	2
+ PDF Chat	A practical tutorial on autoencoders for nonlinear feature fusion: Taxonomy, models, software and guidelines	2017	David Charte Francisco Charte Salvador García María José del Jesús Francisco Herrera	2
+ PDF Chat	Influence of multiple-sequence-alignment depth on Potts statistical models of protein covariation	2019	Allan Haldane Ronald M. Levy	2
+	Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift	2015	Sergey Ioffe Christian Szegedy	2
+ PDF Chat	ProteinNet: a standardized data set for machine learning of protein structure	2019	Mohammed AlQuraishi	2
+ PDF Chat	On the Sufficiency of Pairwise Interactions in Maximum Entropy Models of Networks	2016	Lina Merchan Ilya Nemenman	2
+ PDF Chat	Learning Compositional Representations of Interacting Systems with Restricted Boltzmann Machines: Comparative Study of Lattice Proteins	2019	Jérôme Tubiana Simona Cocco Rémi Monasson	2
+	Intrinsic dimension of data representations in deep neural networks	2019	Alessio Ansuini Alessandro Laio Jakob H. Macke Davide Zoccolan	2
+ PDF Chat	Network Information and Connected Correlations	2003	Elad Schneidman Susanne Still Michael J. Berry William Bialek	2
+	Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift	2015	Sergey Ioffe Christian Szegedy	2
+	ProtTrans: Towards Cracking the Language of Life's Code Through Self-Supervised Deep Learning and High Performance Computing	2020	Ahmed Elnaggar Michael Heinzinger Christian Dallago Ghalia Rihawi Yu Wang Llion Jones Tom Gibbs Tamás Fehér Christoph Angerer Martin Steinegger	2
+	How to Hallucinate Functional Proteins	2019	Zak Costello Héctor García Martín	2
+	Identification of direct residue contacts in protein–protein interaction by message passing	2008	Martin Weigt Robert A. White Hendrik Szurmant James A. Hoch Terence Hwa	2
+	Diagnosing and Enhancing VAE Models	2019	Bin Dai David Wipf	2
+	Rethinking Attention with Performers	2020	Krzysztof Choromański Valerii Likhosherstov David Dohan Xingyou Song Andreea Gane Tamás Sarlós Peter Hawkins Jared Davis Afroz Mohiuddin Łukasz Kaiser	2
+	Well-Tempered Metadynamics Converges Asymptotically	2014	James F. Dama Michele Parrinello Gregory A. Voth	1
+	Physical mechanisms of micro- and nanodomain formation in multicomponent lipid membranes	2016	Friederike Schmid	1
+	Direction- and Salt-Dependent Ionic Current Signatures for DNA Sensing with Asymmetric Nanopores	2017	Kaikai Chen Nicholas A. W. Bell Jinglin Kong Yu Tian Ulrich F. Keyser	1
+ PDF Chat	Coarse-grained simulation of DNA using LAMMPS	2018	Oliver Henrich Yair Augusto Gutiérrez Fosado Tine Curk Thomas E. Ouldridge	1
+	Explorations in Homeomorphic Variational Auto-Encoding	2018	Luca Falorsi Pim de Haan Tim R. Davidson Nicola De Cao Maurice Weiler Patrick Forré Taco Cohen	1
+	Diagnosing and Enhancing VAE Models	2019	Bin Dai David Wipf	1
+ PDF Chat	An Introduction to Variational Autoencoders	2019	Diederik P. Kingma Max Welling	1
+ PDF Chat	Variational Autoencoder with Implicit Optimal Priors	2019	Hiroshi Takahashi Tomoharu Iwata Yuki Yamanaka Masanori Yamada Satoshi Yagi	1
+	Cyclical Annealing Schedule: A Simple Approach to Mitigating KL Vanishing	2019	Hao Fu Chunyuan Li Xiaodong Liu Jianfeng Gao Aslı Çelikyılmaz Lawrence Carin	1
+	Stochastic Backpropagation and Approximate Inference in Deep Generative Models	2014	Danilo Jimenez Rezende Shakir Mohamed Daan Wierstra	1
+	Wasserstein Auto-Encoders	2018	Ilya Tolstikhin Olivier Bousquet Sylvain Gelly Bernhard Schölkopf	1
+	Adam: A Method for Stochastic Optimization	2014	Diederik P. Kingma Jimmy Ba	1
+	Evaluating Protein Transfer Learning with TAPE	2019	Roshan Rao Nicholas Bhattacharya Neil Thomas Yan Duan Peter Chen John Canny Pieter Abbeel Yun S. Song	1
+	The Usual Suspects? Reassessing Blame for VAE Posterior Collapse	2019	Bin Dai Ziyu Wang David Wipf	1
+	Variational Autoencoders with Riemannian Brownian Motion Priors	2020	Dimitris Kalatzis David Eklund Georgios Arvanitidis Søren Hauberg	1
+ PDF Chat	Microcanonical coarse-graining of the kinetic Ising model	2020	Daniel Sigg Vincent A. Voelz Vincenzo Carnevale	1
+	Error estimates on averages of correlated data	1989	Henrik Flyvbjerg Henrik Gordon Petersen	1
+ PDF Chat	Particle-based Ising model	2021	Quentin Novinger Antonio Suma Daniel Sigg Giuseppe Gonnella Vincenzo Carnevale	1