Mattia Miotto

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All published works (29)

Action	Title	Date	Authors
+ PDF Ask	Compact Assessment of Molecular Surface Complementarities Enhances Neural Network-Aided Prediction of Key Binding Residues	2025-02-21	Greta Grassmann Lorenzo Di Rienzo G. Ruocco Mattia Miotto Edoardo Milanetti
+ PDF Ask	Breaking the bonds of generative artificial intelligence by minimizing the maximum entropy	2025-02-18	Mattia Miotto Lorenzo Monacelli
+ PDF Ask	Non-equilibrium phase transitions in hybrid Voronoi models of cell colonies	2024-11-12	Mattia Miotto G. Ruocco Matteo Paoluzzi
+ PDF Ask	Robust assessment of asymmetric division in colon cancer cells	2024-09-28	Domenico Caudo C Giannattasio Simone Scalise Valeria de Turris Fabio Giavazzi G. Ruocco Giorgio Gosti Giovanna Peruzzi Mattia Miotto
+ PDF Ask	Probing leukemia cells behavior under starvation	2024-08-17	Simone Scalise Giorgio Gosti G. Ruocco Giovanna Peruzzi Mattia Miotto
+ PDF Ask	Compact assessment of molecular surface complementarities enhances neural network-aided prediction of key binding residues	2024-07-30	Greta Grassmann Lorenzo Di Rienzo G. Ruocco Mattia Miotto Edoardo Milanetti
+ PDF Ask	High-Throughput Interactome Determination via Sulfur Anomalous Scattering	2024-03-21	Mattia Miotto Edoardo Milanetti Riccardo Mincigrucci C. Masciovecchio G. Ruocco
+ PDF Ask	Zepyros: A webserver to evaluate the shape complementarity of protein-protein interfaces	2024-02-10	Mattia Miotto Lorenzo Di Rienzo Leonardo Bò G. Ruocco Edoardo Milanetti
+ PDF Ask	Osmolyte-Induced Protein Stability Changes Explained by Graph Theory	2023-01-01	Mattia Miotto Nina Warner G. Ruocco Gian Gaetano Tartaglia Oren A. Scherman Edoardo Milanetti
+ PDF Ask	Determining cancer cells division strategy	2023-01-01	Mattia Miotto Simone Scalise Marco Leonetti G. Ruocco Giovanna Peruzzi Giorgio Gosti
+ PDF Ask	High throughput interactome determination via sulfur anomalous scattering	2023-01-01	Mattia Miotto Edoardo Milanetti Riccardo Mincigrucci C. Masciovecchio G. Ruocco
+ PDF Ask	Spatial organization of hydrophobic and charged residues affects protein thermal stability and binding affinity	2022-07-15	Fausta Desantis Mattia Miotto Lorenzo Di Rienzo Edoardo Milanetti G. Ruocco
+ PDF Ask	Shape Complementarity Optimization of Antibody–Antigen Interfaces: The Application to SARS-CoV-2 Spike Protein	2022-05-20	Alfredo De Lauro Lorenzo Di Rienzo Mattia Miotto Pier Paolo Olimpieri Edoardo Milanetti G. Ruocco
+ PDF Ask	Electrostatic complementarity at the interface drives transient protein-protein interactions	2022-01-01	Greta Grassmann Lorenzo Di Rienzo Giorgio Gosti Marco Leonetti G. Ruocco Mattia Miotto Edoardo Milanetti
+ PDF Ask	A Computational Approach to Investigate TDP-43 RNA-Recognition Motif 2 C-Terminal Fragments Aggregation in Amyotrophic Lateral Sclerosis	2021-12-19	Greta Grassmann Mattia Miotto Lorenzo Di Rienzo Federico Salaris Beatrice Silvestri Elsa Zacco Alessandro Rosa Gian Gaetano Tartaglia G. Ruocco Edoardo Milanetti
+ PDF Ask	A computational approach to investigate TDP-43 C-terminal fragments aggregation in Amyotrophic Lateral Sclerosis	2021-07-19	Greta Grassmann Mattia Miotto Lorenzo Di Rienzo Federico Salaris Beatrice Silvestri Elsa Zacco Alessandro Rosa Gian Gaetano Tartaglia G. Ruocco Edoardo Milanetti
+ PDF Ask	Investigating the side-chain structural organization behind the stability of protein folding and binding.	2021-07-16	Fausta Desantis Mattia Miotto Lorenzo Di Rienzo Edoardo Milanetti G. Ruocco
+ PDF Ask	In-Silico Evidence for a Two Receptor Based Strategy of SARS-CoV-2	2021-06-09	Edoardo Milanetti Mattia Miotto Lorenzo Di Rienzo Madhu Nagaraj Michele Monti Thaddeus W. Golbek Giorgio Gosti Steven J. Roeters Tobias Weidner Daniel E. Otzen
+ PDF Ask	Does blood type affect the COVID-19 infection pattern?	2021-05-13	Mattia Miotto Lorenzo Di Rienzo Giorgio Gosti Edoardo Milanetti G. Ruocco
+ PDF Ask	Initial cell density encodes proliferative potential in cancer cell populations	2021-03-17	Chiara Enrico Bena Marco Del Giudice Alice Grob Thomas Gueudré Mattia Miotto Dimitra Gialama Matteo Osella Emilia Turco Francesca Ceroni Andrea De Martino
+ PDF Ask	Molecular Mechanisms Behind Anti SARS-CoV-2 Action of Lactoferrin	2021-02-15	Mattia Miotto Lorenzo Di Rienzo Leonardo Bò Alberto Boffi G. Ruocco Edoardo Milanetti
+ PDF Ask	New algorithm to determine a minimal representation of the molecular surface	2021-01-01	Greta Grassmann Mattia Miotto Lorenzo Di Rienzo Giorgio Gosti G. Ruocco Edoardo Milanetti
+ PDF Ask	Genome heterogeneity drives the evolution of species	2020-10-05	Mattia Miotto Lorenzo Monacelli
+ PDF Ask	In-Silico evidence for two receptors based strategy of SARS-CoV-2	2020-03-27	Edoardo Milanetti Mattia Miotto Lorenzo Di Rienzo Michele Monti Giorgio Gosti G. Ruocco
+ PDF Ask	Simulated Epidemics in 3D Protein Structures to Detect Functional Properties	2020-02-03	Mattia Miotto Lorenzo Di Rienzo Pietro Corsi G. Ruocco Domenico Raimondo Edoardo Milanetti
+ PDF Ask	Competing endogenous RNA crosstalk at system level	2019-11-01	Mattia Miotto Enzo Marinari Andrea De Martino
+ PDF Ask	Exploration-exploitation tradeoffs dictate the optimal distributions of phenotypes for populations subject to fitness fluctuations	2019-01-17	Andrea De Martino Thomas Gueudré Mattia Miotto
+ PDF Ask	Entropy evaluation sheds light on ecosystem complexity	2018-10-03	Mattia Miotto Lorenzo Monacelli
+	An exploration-exploitation tradeoff dictates the optimal distribution of phenotypes for populations in presence of fitness fluctuations	2018-09-28	Andrea De Martino Thomas Gueudré Mattia Miotto

Common Coauthors

Coauthor	Papers Together
G. Ruocco	22
Edoardo Milanetti	18
Lorenzo Di Rienzo	15
Giorgio Gosti	8
Greta Grassmann	6
Andrea De Martino	4
Thomas Gueudré	3
Lorenzo Monacelli	3
Simone Scalise	3
Gian Gaetano Tartaglia	3
Giovanna Peruzzi	3
Leonardo Bò	2
C. Masciovecchio	2
Beatrice Silvestri	2
Marco Leonetti	2
Riccardo Mincigrucci	2
Fausta Desantis	2
Alessandro Rosa	2
Elsa Zacco	2
Michele Monti	2
Federico Salaris	2
Enzo Marinari	1
Valeria de Turris	1
Alberto Boffi	1
Emilia Turco	1
C Giannattasio	1
Domenico Caudo	1
Alice Grob	1
Alfredo De Lauro	1
Steven J. Roeters	1
Marco Del Giudice	1
Madhu Nagaraj	1
Chiara Enrico Bena	1
Thaddeus W. Golbek	1
Pier Paolo Olimpieri	1
Fabio Giavazzi	1
Matteo Osella	1
Tobias Weidner	1
Oren A. Scherman	1
Matteo Paoluzzi	1
Carla Bosia	1
Nina Warner	1
Domenico Raimondo	1
Francesca Ceroni	1
Daniel E. Otzen	1
Pietro Corsi	1
Dimitra Gialama	1

Commonly Cited References

Action	Title	Date	Authors	# of times referenced
+	AREAS, VOLUMES, PACKING, AND PROTEIN STRUCTURE	1977-06-01	Frederic M. Richards	8
+ PDF Ask	Molecular Mechanisms Behind Anti SARS-CoV-2 Action of Lactoferrin	2021-02-15	Mattia Miotto Lorenzo Di Rienzo Leonardo Bò Alberto Boffi G. Ruocco Edoardo Milanetti	6
+ PDF Ask	In-Silico Evidence for a Two Receptor Based Strategy of SARS-CoV-2	2021-06-09	Edoardo Milanetti Mattia Miotto Lorenzo Di Rienzo Madhu Nagaraj Michele Monti Thaddeus W. Golbek Giorgio Gosti Steven J. Roeters Tobias Weidner Daniel E. Otzen	5
+ PDF Ask	Simulated Epidemics in 3D Protein Structures to Detect Functional Properties	2020-02-03	Mattia Miotto Lorenzo Di Rienzo Pietro Corsi G. Ruocco Domenico Raimondo Edoardo Milanetti	4
+ PDF Ask	Quantifying the entropic cost of cellular growth control	2017-07-10	Daniele De Martino Fabrizio Capuani Andrea De Martino	4
+ PDF Ask	Growth against entropy in bacterial metabolism: the phenotypic trade-off behind empirical growth rate distributions in<i>E</i>.<i>coli</i>	2016-05-27	Daniele De Martino Fabrizio Capuani Andrea De Martino	4
+ PDF Ask	Canonical sampling through velocity rescaling	2007-01-03	Giovanni Bussi Davide Donadio Michele Parrinello	4
+ PDF Ask	Spatial organization of hydrophobic and charged residues affects protein thermal stability and binding affinity	2022-07-15	Fausta Desantis Mattia Miotto Lorenzo Di Rienzo Edoardo Milanetti G. Ruocco	4
+ PDF Ask	Critical behavior of a lattice prey-predator model	2001-08-29	Tibor Antal Michel Droz Adam Lipowski Géza Ódor	2
+	Immune responses in COVID-19 and potential vaccines: Lessons learned from SARS and MERS epidemic	2020-01-01	Eakachai Prompetchara Chutitorn Ketloy Tanapat Palaga	2
+ PDF Ask	Stochastic population dynamics in spatially extended predator–prey systems	2017-10-25	Ulrich Dobramysl Mauro Mobilia Michel Pleimling Uwe C. Täuber	2
+ PDF Ask	How to Distinguish Conformational Selection and Induced Fit Based on Chemical Relaxation Rates	2016-09-16	Fabian Paul Thomas R. Weikl	2
+	Incubation periods of acute respiratory viral infections: a systematic review	2009-04-23	Justin Lessler Nicholas G Reich Ron Brookmeyer Trish M. Perl Kenrad E. Nelson Derek A. T. Cummings	2
+ PDF Ask	Structural analysis of SARS-CoV-2 and prediction of the human interactome	2020-01-01	Andrea Vandelli Michele Monti Edoardo Milanetti Riccardo Delli Ponti Gian Gaetano Tartaglia	2
+ PDF Ask	A Computational Approach to Investigate TDP-43 RNA-Recognition Motif 2 C-Terminal Fragments Aggregation in Amyotrophic Lateral Sclerosis	2021-12-19	Greta Grassmann Mattia Miotto Lorenzo Di Rienzo Federico Salaris Beatrice Silvestri Elsa Zacco Alessandro Rosa Gian Gaetano Tartaglia G. Ruocco Edoardo Milanetti	2
+ PDF Ask	The NumPy Array: A Structure for Efficient Numerical Computation	2011-03-01	Stéfan van der Walt Steven C. Colbert Gaël Varoquaux	2
+ PDF Ask	Asymptotic analysis of noisy fitness maximization, applied to metabolism & growth	2016-12-30	Daniele De Martino Davide Masoero	2
+ PDF Ask	Exploration-exploitation tradeoffs dictate the optimal distributions of phenotypes for populations subject to fitness fluctuations	2019-01-17	Andrea De Martino Thomas Gueudré Mattia Miotto	2
+	Turning ecology and evolution against cancer	2014-04-17	Kirill S. Korolev João B. Xavier Jeff Gore	2
+ PDF Ask	Protein folding and binding can emerge as evolutionary spandrels through structural coupling	2015-01-26	Michael Manhart Alexandre V. Morozov	2
+ PDF Ask	Fluctuations and correlations in lattice models for predator-prey interaction	2006-04-26	Mauro Mobilia Ivan T. Georgiev Uwe C. Täuber	2
+ PDF Ask	Maximum Allowed Solvent Accessibilites of Residues in Proteins	2013-11-21	Matthew Tien Austin G. Meyer Dariya K. Sydykova Stephanie J. Spielman Claus O. Wilke	2
+ PDF Ask	SPRINT: ultrafast protein-protein interaction prediction of the entire human interactome	2017-11-15	Yiwei Li Lucian Ilie	2
+ PDF Ask	Induced fit, conformational selection and independent dynamic segments: an extended view of binding events	2010-06-12	Péter Csermely Robin Palotai Ruth Nussinov	2
+ PDF Ask	Fast and interpretable classification of small X-ray diffraction datasets using data augmentation and deep neural networks	2019-05-17	Felipe Oviedo Zekun Ren Shijing Sun Charles Settens Zhe Liu Noor Titan Putri Hartono Savitha Ramasamy Brian DeCost Siyu Tian Giuseppe Romano	2
+ PDF Ask	Constrained Markovian Dynamics of Random Graphs	2009-09-01	A C C Coolen Andrea De Martino Alessia Annibale	1
+ PDF Ask	Sympatric speciation in an age-structured population living on a lattice	2004-06-01	A. O. Sousa	1
+ PDF Ask	Oscillatory behavior in a lattice prey-predator system	1999-11-01	Adam Lipowski	1
+ PDF Ask	Dynamical maximum entropy approach to flocking	2014-04-16	Andrea Cavagna Irene Giardina Francesco Ginelli Thierry Mora Duccio Piovani Raffaele Tavarone Aleksandra M. Walczak	1
+ PDF Ask	Maximum entropy models for antibody diversity	2010-03-08	Thierry Mora Aleksandra M. Walczak William Bialek Curtis G. Callan	1
+	Multiple coexistence states for a prey–predator system with cross-diffusion	2003-10-28	Kousuke Kuto Yoshio Yamada	1
+ PDF Ask	Statistical physics of social dynamics	2009-05-11	Claudio Castellano Santo Fortunato Vittorio Loreto	1
+	Some discrete-time SI, SIR, and SIS epidemic models	1994-11-01	Linda J. S. Allen	1
+	Some generalized order-disorder transformations	1952-01-01	R. B. Potts	1
+ PDF Ask	Stochastic population oscillations in spatial predator-prey models	2011-09-15	Uwe C. Täuber	1
+ PDF Ask	Anharmonic free energies and phonon dispersions from the stochastic self-consistent harmonic approximation: Application to platinum and palladium hydrides	2014-02-10	Ion Errea Matteo Calandra Francesco Mauri	1
+ PDF Ask	RNA-Based Regulation: Dynamics and Response to Perturbations of Competing RNAs	2014-08-01	Matteo Figliuzzi Andrea De Martino Enzo Marinari	1
+ PDF Ask	Explore or Exploit? A Generic Model and an Exactly Solvable Case	2014-02-05	Thomas Gueudré Alexander Dobrinevski Jean‐Philippe Bouchaud	1
+ PDF Ask	Switching and Growth for Microbial Populations in Catastrophic Responsive Environments	2010-04-01	Paolo Visco Rosalind J. Allen Satya N. Majumdar M. R. Evans	1
+ PDF Ask	Hydrophobic, Hydrophilic, and Charged Amino Acid Networks within Protein	2006-12-16	Md. Aftabuddin Sudip Kundu	1
+ PDF Ask	Identification of direct residue contacts in protein–protein interaction by message passing	2008-12-31	Martin Weigt Robert A. White Hendrik Szurmant James A. Hoch Terence Hwa	1
+	Preconditioning of Truncated-Newton Methods	1985-07-01	Stephen G. Nash	1
+	Physics of Cancer: The Impact of Heterogeneity	2011-03-02	Qiucen Zhang Robert H. Austin	1
+	A New Interpretation of Information Rate	1956-07-01	J. L. Kelly	1
+ PDF Ask	Predictability, Complexity, and Learning	2001-11-01	William Bialek Ilya Nemenman Naftali Tishby	1
+ PDF Ask	Weak pairwise correlations imply strongly correlated network states in a neural population	2006-04-01	Elad Schneidman Michael J. Berry Ronen Segev William Bialek	1
+ PDF Ask	A bit-string model for biological aging	1995-03-01	T. J. P. Penna	1
+ PDF Ask	Heterogeneity for IGF-II production maintained by public goods dynamics in neuroendocrine pancreatic cancer	2015-01-26	Marco Archetti Daniela A. Ferraro Gerhard Christofori	1
+ PDF Ask	Statistical mechanics of complex networks	2002-01-30	Réka Albert Albert‐László Barabási	1
+ PDF Ask	Stochastic lattice gas model for a predator-prey system	1994-06-01	Javier E. Satulovsky Tânia Tomé	1