Yann Ponty

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All published works
Action Title Year Authors
+ PDF Chat Sequence graphs realizations and ambiguity in language models 2024 Sammy Khalife
Yann Ponty
Laurent Bulteau
+ PDF Chat Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models 2020 Cédric Chauve
Yann Ponty
Michael Wallner
+ PDF Chat Fixed-parameter tractable sampling for RNA design with multiple target structures 2019 Stefan Hammer
Wei Wang
Sebastian Will
Yann Ponty
+ Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models 2019 Cédric Chauve
Yann Ponty
Michael Wallner
+ Effective Rotation-invariant Point CNN with Spherical Harmonics kernels 2019 Adrien Poulenard
Marie‐Julie Rakotosaona
Yann Ponty
Maks Ovsjanikov
+ PDF Chat Small-World Networks and RNA Secondary Structures 2018 Defne Surujon
Yann Ponty
Peter Clote
+ PDF Chat Taming reluctant random walks in the positive quadrant 2017 Jérémie Lumbroso
Marni Mishna
Yann Ponty
+ PDF Chat Combinatorial RNA Design: Designability and Structure-Approximating Algorithm in Watson–Crick and Nussinov–Jacobson Energy Models 2016 Jozef Haleš
Alice Héliou
Ján Maňuch
Yann Ponty
Ladislav Stacho
+ Taming Reluctant Random Walks in the Positive Quadrant 2016 Jérémie Lumbroso
Marni Mishna
Yann Ponty
+ Combinatorial RNA Design 2016 Jozef Haleš
Alice Héliou
Ján Maňuch
Yann Ponty
Ladislav Stacho
+ Combinatorial RNA Design Designability and Structure-Approximating Algorithm in Watson-Crick and Nussinov-Jacobson Energy Models 2016 Jozef Haleš
Alice Héliou
Ján Maňuch
Yann Ponty
Ladislav Stacho
+ PDF Chat Counting, Generating and Sampling Tree Alignments 2016 Cédric Chauve
Julien Courtiel
Yann Ponty
+ Taming Reluctant Random Walks in the Positive Quadrant 2016 Jérémie Lumbroso
Marni Mishna
Yann Ponty
+ Combinatorial RNA Design Designability and Structure-Approximating Algorithm in Watson-Crick and Nussinov-Jacobson Energy Models 2016 Jozef Haleš
Alice Héliou
Ján Maňuch
Yann Ponty
Ladislav Stacho
+ Counting, generating and sampling tree alignments 2015 Cédric Chauve
Julien Courtiel
Yann Ponty
+ Assessing the robustness of parsimonious predictions for gene neighborhoods from reconciled phylogenies 2015 Ashok Rajaraman
Cédric Chauve
Yann Ponty
+ Combinatorial RNA Design: Designability and Structure-Approximating Algorithm 2015 Jozef Haleš
Ján Maňuch
Yann Ponty
Ladislav Stacho
+ PDF Chat Assessing the Robustness of Parsimonious Predictions for Gene Neighborhoods from Reconciled Phylogenies: Supplementary Material 2015 Ashok Rajaraman
Cédric Chauve
Yann Ponty
+ Combinatorial RNA Design: Designability and Structure-Approximating Algorithm 2015 Jozef Haleš
Ján Maňuch
Yann Ponty
Ladislav Stacho
+ Counting, generating and sampling tree alignments 2015 Cédric Chauve
Julien Courtiel
Yann Ponty
+ PDF Chat Using Structural and Evolutionary Information to Detect and Correct Pyrosequencing Errors in Noncoding RNAs 2013 Vladimir Reinharz
Yann Ponty
Jérôme Waldispühl
+ PDF Chat Flexible RNA design under structure and sequence constraints using formal languages 2013 Yu Zhou
Yann Ponty
Stéphane Vialette
Jérôme Waldispühl
Yi Zhang
Alain Denise
+ Using structural and evolutionary information to detect and correct pyrosequencing errors in non-coding RNAs 2013 Vladimir Reinharz
Yann Ponty
Jérôme Waldispühl
+ Flexible RNA design under structure and sequence constraints using formal languages 2013 Yu Zhou
Yann Ponty
Stéphane Vialette
Jérôme Waldispühl
Yi Zhang
Alain Denise
+ Using structural and evolutionary information to detect and correct pyrosequencing errors in non-coding RNAs 2013 Vladimir Reinharz
Yann Ponty
Jérôme Waldispühl
+ Non-redundant random generation algorithms for weighted context-free languages 2012 Andy Lorenz
Yann Ponty
+ The weighted words collector 2012 Jérémie Du Boisberranger
Danièle Gardy
Yann Ponty
+ Rule-weighted and terminal-weighted context-free grammars have identical expressivity 2012 Yann Ponty
+ PDF Chat The weighted words collector 2012 Jérémie Du Boisberranger
Danièle Gardy
Yann Ponty
+ PDF Chat Tree Decomposition and Parameterized Algorithms for RNA Structure-Sequence Alignment Including Tertiary Interactions and Pseudoknots 2012 Philippe Rinaudo
Yann Ponty
Dominique Barth
Alain Denise
+ Biodiversity of Pattern Distributions in Combinatorial Ecosystems. 2012 Cyril Banderier
Olivier Bodini
Yann Ponty
Hanane Tafat Bouzid
+ The weighted words collector 2012 Jérémie Du Boisberranger
Danièle Gardy
Yann Ponty
+ Non-redundant random generation algorithms for weighted context-free languages 2012 Andy Lorenz
Yann Ponty
+ A Combinatorial Framework for Designing (Pseudoknotted) RNA Algorithms 2011 Yann Ponty
Cédric Saule
+ PDF Chat A Combinatorial Framework for Designing (Pseudoknotted) RNA Algorithms 2011 Yann Ponty
Cédric Saule
+ A Combinatorial Framework for Designing (Pseudoknotted) RNA Algorithms 2011 Yann Ponty
Cédric Saule
+ PDF Chat Controlled non-uniform random generation of decomposable structures 2010 Alain Denise
Yann Ponty
Michel Termier
+ Multi-dimensional Boltzmann Sampling of context-free Languages 2010 Olivier Bodini
Yann Ponty
+ Multi-Parameter Sampling for Rational Languages 2010 Olivier Bodini
Yann Ponty
+ Weighted random generation of context-free languages: Analysis of collisions in random urn occupancy models 2010 Danièle Gardy
Yann Ponty
+ PDF Chat Multi-dimensional Boltzmann Sampling of Languages 2010 Olivier Bodini
Yann Ponty
+ Non-redundant random generation from weighted context-free languages 2010 Yann Ponty
+ PDF Chat Culminating paths 2008 Mireille Bousquet‐Mélou
Yann Ponty
+ PDF Chat Culminating paths 2008 Mireille Bousquet‐Mélou
Yann Ponty
+ PDF Chat Culminating paths 2008 Mireille Bousquet‐Mélou
Yann Ponty
+ Culminating paths 2007 Mireille Bousquet‐Mélou
Yann Ponty
+ PDF Chat Estimating seed sensitivity on homogeneous alignments 2004 Grégory Kucherov
Laurent Noé
Yann Ponty
Common Coauthors
Commonly Cited References
Action Title Year Authors # of times referenced
+ PDF Chat Controlled non-uniform random generation of decomposable structures 2010 Alain Denise
Yann Ponty
Michel Termier
8
+ Systems of functional equations 2000 Michael Drmota
8
+ Boltzmann Samplers for the Random Generation of Combinatorial Structures 2004 Philippe Duchon
Philippe Flajolet
Guy Louchard
Gilles Schaeffer
6
+ Analytic Combinatorics 2009 Philippe Flajolet
Robert Sedgewick
6
+ PDF Chat Multi-dimensional Boltzmann Sampling of Languages 2010 Olivier Bodini
Yann Ponty
6
+ PDF Chat Boltzmann Sampling of Unlabelled Structures 2007 Philippe Flajolet
Éric Fusy
Carine Pivoteau
5
+ Systems of functional equations 1997 Michael Drmota
4
+ PDF Chat Flexible RNA design under structure and sequence constraints using formal languages 2013 Yu Zhou
Yann Ponty
Stéphane Vialette
Jérôme Waldispühl
Yi Zhang
Alain Denise
4
+ The Weighted Coupon Collector’s Problem and Applications 2009 Petra Berenbrink
Thomas Sauerwald
3
+ Central and local limit theorems applied to asymptotic enumeration. III. Matrix recursions 1983 Edward A. Bender
L. Bruce Richmond
S. Gill Williamson
3
+ Non uniform random generation of generalized Motzkin paths 2006 Srečko Brlek
Elisa Pergola
Olivier Roques
3
+ PDF Chat GFUN 1994 Bruno Salvy
Paul Zimmermann
3
+ PDF Chat Uniform random sampling of traces in very large models 2006 Alain Denise
Marie-Claude Gaudel
Sandrine-Dominique Gouraud
Richard Lassaigne
Sylvain Peyronnet
3
+ Relax, but Don’t be Too Lazy 2002 Joris van der Hoeven
3
+ Weighted random generation of context-free languages: Analysis of collisions in random urn occupancy models 2010 Danièle Gardy
Yann Ponty
2
+ General asymptotic estimates for the Coupon Collector Problem 1996 Shahar Boneh
Vassilis G. Papanicolaou
2
+ PDF Chat Polynomial tuning of multiparametric combinatorial samplers 2018 Maciej Bendkowski
Olivier Bodini
Sergey Dovgal
2
+ Coloring rules for finite trees, and probabilities of monadic second order sentences 1997 Alan R. Woods
2
+ PDF Chat The Generalised Coupon Collector Problem 2008 Peter Neal
2
+ PDF Chat Singularity Analysis of Generating Functions 1990 Philippe Flajolet
Andrew Odlyzko
2
+ The coupon-collector's problem revisited 2003 Ilan Adler
Shmuel S. Oren
Sheldon M. Ross
2
+ PDF Chat Tropical geometry of statistical models 2004 Lior Pachter
Bernd Sturmfels
2
+ Central and local limit theorems applied to asymptotic enumeration II: Multivariate generating functions 1983 Edward A. Bender
L. Bruce Richmond
2
+ PDF Chat Parametric inference for biological sequence analysis 2004 Lior Pachter
Bernd Sturmfels
2
+ PDF Chat TETRIS IS HARD, EVEN TO APPROXIMATE 2004 Ron Breukelaar
Erik D. Demaine
Susan Hohenberger
Hendrik Jan Hoogeboom
Walter A. Kosters
David Liben‐Nowell
2
+ PDF Chat A Combinatorial Framework for Designing (Pseudoknotted) RNA Algorithms 2011 Yann Ponty
Cédric Saule
2
+ The number of standard and of effective multiple alignments 1998 Andreas Dress
Burkhard Morgenstern
Jens Stoye
2
+ Random Sampling from Boltzmann Principles 2002 Philippe Duchon
Philippe Flajolet
Guy Louchard
Gilles Schaeffer
2
+ Non Uniform Generation of Combinatorial Objects 2010 Frank Weinberg
Markus E. Nebel
2
+ PDF Chat Finite Range Random Walk on Free Groups and Homogeneous Trees 1993 Steven P. Lalley
2
+ Analytic models and ambiguity of context-free languages 1987 Philippe Flajolet
2
+ Flexible RNA design under structure and sequence constraints using formal languages 2013 Yu Zhou
Yann Ponty
Stéphane Vialette
Jérôme Waldispühl
Yi Zhang
Alain Denise
2
+ PDF Chat Efficient Exploration of the Space of Reconciled Gene Trees 2013 Gergely J. Szöllősi
Wojciech Rosikiewicz
Bastien Boussau
Éric Tannier
Vincent Daubin
1
+ PDF Chat On the exit time from a cone for brownian motion with drift 2014 Rodolphe Garbit
Kilian Raschel
1
+ Faster integer multiplication 2007 Martin Fürer
1
+ PDF Chat Counting, Generating and Sampling Tree Alignments 2016 Cédric Chauve
Julien Courtiel
Yann Ponty
1
+ Asymptotic connectivity for the network of RNA secondary structures 2015 Peter Clote
1
+ PDF Chat Exact-size Sampling for Motzkin Trees in Linear Time via Boltzmann Samplers and Holonomic Specification 2013 Axel Bacher
Olivier Bodini
Alice Jacquot
1
+ PDF Chat On 3-Dimensional Lattice Walks Confined to the Positive Octant 2016 Alin Bostan
Mireille Bousquet‐Mélou
Manuel Kauers
Stephen Melczer
1
+ PDF Chat Enumeration of Ancestral Configurations for Matching Gene Trees and Species Trees 2017 Filippo Disanto
Noah A. Rosenberg
1
+ PDF Chat Gene tree species tree reconciliation with gene conversion 2019 Damir Hasić
Éric Tannier
1
+ On the shape of random Pólya structures 2018 Bernhard Gittenberger
Emma Yu Jin
Michael Wallner
1
+ Lattice paths with catastrophes 2017 Cyril Banderier
Michael Wallner
1
+ PDF Chat Random walks in Z_+^2 with non-zero drift absorbed at the axes 2011 Irina Kurkova
Kilian Raschel
1
+ PDF Chat Local height in weighted Dyck models of random walks and the variability of the number of coalescent histories for caterpillar-shaped gene trees and species trees 2019 Filippo Disanto
Emanuele Munarini
1
+ The inference of gene trees with species trees 2013 Gergely J. Szöllősi
Éric Tannier
Vincent Daubin
Bastien Boussau
1
+ On the Average Complexity of Moore's State Minimization Algorithm 2009 Frédérique Bassino
Julien David
Cyril Nicaud
1
+ Efficient Exploration of the Space of Reconciled Gene Trees 2013 Gergely J. Szöllősi
Wojciech Rosikiewicz
Bastien Boussau
Éric Tannier
Vincent Daubin
1
+ PDF Chat Coalescent Histories for Lodgepole Species Trees 2015 Filippo Disanto
Noah A. Rosenberg
1
+ PDF Chat Counting walks in a quadrant: a unified approach via boundary value problems 2012 Kilian Raschel
1