Nikolai Slavov

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All published works

Action	Title	Year	Authors
+	Modeling and interpretation of single-cell proteogenomic data.	2023	Andrew Leduc Hannah Harens Nikolai Slavov
+ PDF Chat	Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments	2023	Laurent Gatto Ruedi Aebersold Jüergen Cox Vadim Demichev Jason Derks Edward Emmott Alexander Franks Alexander R. Ivanov Ryan Kelly Luke Khoury
+ PDF Chat	Sampling the proteome by emerging single-molecule and mass spectrometry methods	2023	Michael J. MacCoss Javier A. Alfaro Danielle A. Faivre Christine C. Wu Meni Wanunu Nikolai Slavov
+	Modeling and interpretation of single-cell proteogenomic data	2023	Andrew Leduc Hannah Harens Nikolai Slavov
+ PDF Chat	New Views of Old Proteins: Clarifying the Enigmatic Proteome	2022	Kristin Burnum-Johnson Thomas P. Conrads Richard R. Drake Amy E. Herr Ravi Iyengar Ryan Kelly Emma Lundberg Michael J. MacCoss Alexandra Naba Garry P. Nolan
+	Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments	2022	Laurent Gatto Ruedi Aebersold Jüergen Cox Vadim Demichev Jason Derks Edward Emmott Alexander Franks Alexander R. Ivanov Ryan Kelly Luke Khoury
+	Sampling the proteome by emerging single-molecule and mass-spectrometry methods	2022	Michael J. MacCoss Javier A. Alfaro Meni Wanunu Danielle A. Faivre Nikolai Slavov
+	New views of old proteins: clarifying the enigmatic proteome	2021	Participants in a NIH Workshop on Functional Integrative Proteomics NULL AUTHOR_ID Kristin E. Burnum Johnson Thomas P. Conrads Richard R. Drake Amy E. Herr Ravi Iyengar Ryan Kelly Emma Lundberg
+ PDF Chat	Analyzing Ribosome Remodeling in Health and Disease	2020	Aleksandra A. Petelski Nikolai Slavov
+ PDF Chat	Single-cell protein analysis by mass spectrometry	2020	Nikolai Slavov
+	Single-cells protein analysis by mass-spectrometry	2020	Nikolai Slavov
+ PDF Chat	SCoPE-MS: mass spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation	2018	Bogdan Budnik Ezra Levy Guillaume Harmange Nikolai Slavov
+ PDF Chat	Quantifying Homologous Proteins and Proteoforms	2018	Dmitry Malioutov Tianchi Chen Edoardo M. Airoldi Jacob D. Jaffe Bogdan Budnik Nikolai Slavov
+ PDF Chat	Transformative Opportunities for Single-Cell Proteomics	2018	Harrison Specht Nikolai Slavov
+	Routinely quantifying single cell proteomes: A new age in quantitative biology and medicine	2018	Harrison Specht Nikolai Slavov
+	Mass spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation	2018	Ezra Levy Bogdan Budnik Nikolai Slavov
+	Quantifying homologous proteins and proteoforms	2017	Dmitry Malioutov Tianchi Chen Jacob D. Jaffe Edoardo M. Airoldi Steve Carr Bogdan Budnik Nikolai Slavov
+ PDF Chat	Post-transcriptional regulation across human tissues	2017	Alexander Franks Edoardo M. Airoldi Nikolai Slavov
+	Mass-spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation	2017	Bogdan Budnik Ezra Levy Nikolai Slavov
+	Mass-spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation	2017	Bogdan Budnik Ezra Levy Nikolai Slavov
+	Mass-spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation	2017	Bogdan Budnik Ezra Levy Guillaume Harmange Nikolai Slavov
+ PDF Chat	Differential Stoichiometry among Core Ribosomal Proteins	2015	Nikolai Slavov Stefan Semrau Edoardo M. Airoldi Bogdan Budnik Alexander van Oudenaarden
+	Post-transcriptional regulation across human tissues	2015	Alexander Franks Edoardo M. Airoldi Nikolai Slavov
+	Convex Total Least Squares	2014	Dmitry Malioutov Nikolai Slavov
+	Convex Total Least Squares	2014	Dmitry Malioutov Nikolai Slavov
+	Inference of Sparse Networks with Unobserved Variables. Application to Gene Regulatory Networks	2014	Nikolai Slavov
+	Extensive Regulation of Metabolism and Growth during the Cell Division Cycle	2014	Nikolai Slavov David Botstein Amy A. Caudy
+ PDF Chat	Differential stoichiometry among core ribosomal proteins	2014	Nikolai Slavov Stefan Semrau Edoardo M. Airoldi Bogdan Budnik Alexander van Oudenaarden
+	Convex Total Least Squares	2014	Dmitry Malioutov Nikolai Slavov
+	Inference of Sparse Networks with Unobserved Variables. Application to Gene Regulatory Networks	2014	Nikolai Slavov
+	Extensive regulation of metabolism and growth during the cell division cycle	2014	Nikolai Slavov David Botstein Amy A. Caudy
+	Convex Total Least Squares	2014	Dmitry Malioutov Nikolai Slavov
+	Inference of Sparse Networks with Unobserved Variables. Application to Gene Regulatory Networks	2010	Nikolai Slavov

Common Coauthors

Coauthor	Papers Together
Bogdan Budnik	9
Dmitry Malioutov	6
Michael J. MacCoss	6
Edoardo M. Airoldi	6
Ezra Levy	5
Alexander Franks	4
Ryan Kelly	4
Jennifer E. Van Eyk	4
Andrew Leduc	4
Aleksandra A. Petelski	3
Jüergen Cox	2
Garry P. Nolan	2
Christine Vogel	2
Alexander van Oudenaarden	2
Marc Vidal	2
Danielle A. Faivre	2
Amy E. Herr	2
Richard R. Drake	2
David H. Perlman	2
Emma Lundberg	2
Ruedi Aebersold	2
Jacob D. Jaffe	2
Jeffrey M. Spraggins	2
Edward Emmott	2
Stefan Semrau	2
Laurent Gatto	2
Alexander R. Ivanov	2
Ravi Iyengar	2
Luke Khoury	2
Harrison Specht	2
John R. Yates	2
Péter Nemes	2
Javier A. Alfaro	2
Erwin M. Schoof	2
Jason Derks	2
Pavel A. Pevzner	2
Vadim Demichev	2
Meni Wanunu	2
Salvatore Sechi	2
Alexandra Naba	2
Amy A. Caudy	2
Christophe Vanderaa	2
David R. Walt	2
Guillaume Harmange	2
Hannah Harens	2
Tianchi Chen	2
Christopher M. Rose	2
Neil L. Kelleher	2
Karin Rodland	2
David Botstein	2

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+ PDF Chat	SCoPE-MS: mass spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation	2018	Bogdan Budnik Ezra Levy Guillaume Harmange Nikolai Slavov	12
+ PDF Chat	Post-transcriptional regulation across human tissues	2017	Alexander Franks Edoardo M. Airoldi Nikolai Slavov	11
+ PDF Chat	Differential Stoichiometry among Core Ribosomal Proteins	2015	Nikolai Slavov Stefan Semrau Edoardo M. Airoldi Bogdan Budnik Alexander van Oudenaarden	7
+ PDF Chat	Transformative Opportunities for Single-Cell Proteomics	2018	Harrison Specht Nikolai Slavov	6
+ PDF Chat	Quantifying Homologous Proteins and Proteoforms	2018	Dmitry Malioutov Tianchi Chen Edoardo M. Airoldi Jacob D. Jaffe Bogdan Budnik Nikolai Slavov	5
+	Mass-spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation	2017	Bogdan Budnik Ezra Levy Guillaume Harmange Nikolai Slavov	4
+	On Simpson's Paradox and the Sure-Thing Principle	1972	Colin R. Blyth	4
+ PDF Chat	Enhancing Sparsity by Reweighted ℓ 1 Minimization	2008	Emmanuel J. Candès Michael B. Wakin Stephen Boyd	3
+ PDF Chat	Single-cell protein analysis by mass spectrometry	2020	Nikolai Slavov	3
+ PDF Chat	An Analysis of the Total Least Squares Problem	1980	Gene H. Golub Charles F. Van Loan	2
+ PDF Chat	The control of the false discovery rate in multiple testing under dependency	2001	Yoav Benjamini Daniel Yekutieli	2
+	Model Selection Through Sparse Maximum Likelihood Estimation	2007	Onureena Banerjee Laurent El Ghaoui Alexandre d’Aspremont	2
+ PDF Chat	A collaborative framework for 3D alignment and classification of heterogeneous subvolumes in cryo-electron tomography	2012	Oleg Kuybeda Gabriel A. Frank Alberto Bartesaghi Mario J. Borgnia Sriram Subramaniam Guillermo Sapiro	2
+ PDF Chat	A rank minimization heuristic with application to minimum order system approximation	2001	Maryam Fazel H. Hindi Stephen Boyd	2
+ PDF Chat	Robust Recovery of Subspace Structures by Low-Rank Representation	2012	Guangcan Liu Zhouchen Lin Shuicheng Yan Ju Sun Yong Yu Yi Ma	2
+	System wide analyses have underestimated protein abundances and the importance of transcription in mammals	2014	Jingyi Jessica Li Peter J. Bickel Mark D. Biggin	2
+ PDF Chat	Overview of total least-squares methods	2007	Ivan Markovsky Sabine Van Huffel	2
+	Weighted and structured sparse total least-squares for perturbed compressive sampling	2011	Hao Zhu Georgios B. Giannakis Geert Leus	2
+ PDF Chat	Application of structured total least squares for system identification and model reduction	2005	Ivan Markovsky Jan C. Willems Sabine Van Huffel Bart De Moor Rik Pintelon	2
+ PDF Chat	Guaranteed Minimum-Rank Solutions of Linear Matrix Equations via Nuclear Norm Minimization	2010	Benjamin Recht Maryam Fazel Pablo A. Parrilo	2
+ PDF Chat	Low-Rank Structure Learning via Nonconvex Heuristic Recovery	2013	Yue Deng Qionghai Dai Risheng Liu Zengke Zhang Sanqing Hu	2
+ PDF Chat	The positive false discovery rate: a Bayesian interpretation and the q-value	2003	John D. Storey	2
+	A Global Solution for the Structured Total Least Squares Problem with Block Circulant Matrices	2005	Amir Beck Aharon Ben‐Tal	2
+	Weighted low-rank approximations	2003	Nathan Srebro Tommi Jaakkola	2
+	Rank-Sparsity Incoherence for Matrix Decomposition	2011	Venkat Chandrasekaran Sujay Sanghavi Pablo A. Parrilo Alan S. Willsky	2
+	Convex Total Least Squares	2014	Dmitry Malioutov Nikolai Slavov	2
+	Mass-spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation	2017	Bogdan Budnik Ezra Levy Nikolai Slavov	2
+ PDF Chat	Cell Growth and Size Homeostasis in Proliferating Animal Cells	2009	Amit Tzur Ran Kafri Valerie S. LeBleu Galit Lahav Marc W. Kirschner	1
+	Mass spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation	2018	Ezra Levy Bogdan Budnik Nikolai Slavov	1
+	Robust solution to least squares problems with uncertain data	1997	Laurent El Ghaoui Hervé Lebret	1
+ PDF Chat	Least angle regression	2004	Bradley Efron Trevor Hastie Iain M. Johnstone Robert Tibshirani	1
+ PDF Chat	Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments	2023	Laurent Gatto Ruedi Aebersold Jüergen Cox Vadim Demichev Jason Derks Edward Emmott Alexander Franks Alexander R. Ivanov Ryan Kelly Luke Khoury	1
+	Accounting for the Multiple Natures of Missing Values in Label-Free Quantitative Proteomics Data Sets to Compare Imputation Strategies	2016	Cosmin Lazar Laurent Gatto Myriam Ferro Christophe Bruley Thomas Bürger	1
+	Software for weighted structured low-rank approximation	2013	Ivan Markovsky Konstantin Usevich	1
+	On Simpson's Paradox and the Sure-Thing Principle	1972	Colin R. Blyth	1
+	Dynamical quorum-sensing and synchronization of nonlinear oscillators coupled through an external medium	2010	David J. Schwab Ania-Ariadna Baetica Pankaj Mehta	1
+	UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction	2018	Leland McInnes John J. Healy	1
+	SDPT3 — A Matlab software package for semidefinite programming, Version 1.3	1999	Kim-Chuan Toh Michael J. Todd Reha Tütüncü	1
+ PDF Chat	The human body at cellular resolution: the NIH Human Biomolecular Atlas Program	2019	M Snyder Shin Lin Amanda L. Posgai Mark A. Atkinson Aviv Regev Jennifer Rood Orit Rozenblatt–Rosen Leslie Gaffney Anna Hupalowska Rahul Satija	1
+ PDF Chat	Random matrix approach to cross correlations in financial data	2002	Vasiliki Plerou Parameswaran Gopikrishnan Bernd Rosenow Luı́s A. Nunes Amaral Thomas Guhr H. Eugene Stanley	1
+	On Future Population	1972	Nathan Keyfitz	1
+	The eigenvalues and eigenvectors of finite, low rank perturbations of large random matrices	2011	Florent Benaych-Georges Raj Rao Nadakuditi	1
+ PDF Chat	A Singular Value Thresholding Algorithm for Matrix Completion	2010	Jian‐Feng Cai Emmanuel J. Candès Zuowei Shen	1
+	Noisy Signal Recovery via Iterative Reweighted L1-Minimization	2009	Deanna Needell	1
+ PDF Chat	Analytical distributions for stochastic gene expression	2008	Vahid Shahrezaei Peter S. Swain	1
+ PDF Chat	What exactly is ‘N’ in cell culture and animal experiments?	2018	Stanley E. Lazic Charlie J. Clarke-Williams Marcus R. Munafò	1
+	Convex Total Least Squares	2014	Dmitry Malioutov Nikolai Slavov	1
+ PDF Chat	De novo Inference of Diversity Genes and Analysis of Non-canonical V(DD)J Recombination in Immunoglobulins	2019	Yana Safonova Pavel A. Pevzner	1
+ PDF Chat	Noisy signal recovery via iterative reweighted L1-minimization	2009	Deanna Needell	1
+ PDF Chat	Guidelines for reporting single-cell RNA-seq experiments	2020	Anja Füllgrabe Nancy George Matthew Green Parisa Nejad Bruce J. Aronow Silvie Fexová Clay Fischer Mallory Freeberg Laura Huerta Norman Morrison	1