Darren P. Martin

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All published works

Action	Title	Year	Authors
+	Network-based multi-omics-disease-drug associations reveal drug repurposing candidates for COVID-19 disease phases	2024	Francis E. Agamah Thomas H. A. Ederveen Michelle Skelton Darren P. Martin Emile R. Chimusa Peter A.C. 't Hoen 't Hoen
+ PDF Chat	Insights into SARS‐CoV‐2 in Angola during the COVID‐19 peak: Molecular epidemiology and genome surveillance	2023	Ngiambudulu M. Francisco Stephanie van Wyk Monika Moir James Emmanuel San Cruz S. Sebastião Houriiyah Tegally Joicymara Xavier Akhil Maharaj Zoraima Neto Pedro Afonso
+ PDF Chat	Molecular Epidemiology and Diversity of SARS-CoV-2 in Ethiopia, 2020–2022	2023	Abay Sisay Derek Tshiabuila Stephanie van Wyk Abraham Tesfaye Gerald Mboowa Samuel O. Oyola Sofonias Kifle Tesema Cheryl Baxter Darren P. Martin Richard Lessells
+ PDF Chat	Global Expansion of SARS-CoV-2 Variants of Concern: Dispersal Patterns and Influence of Air Travel	2022	Houriiyah Tegally Eduan Wilkinson Darren P. Martin Monika Moir Anderson F. Brito Marta Giovanetti Kamran Khan Carmen Huber Isaac I. Bogoch James Emmanuel San
+ PDF Chat	The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance	2022	Houriiyah Tegally James Emmanuel San Matthew Cotten Monika Moir Bryan Tegomoh Gerald Mboowa Darren P. Martin Cheryl Baxter Arnold W. Lambisia Amadou Diallo
+ PDF Chat	Ready-to-use public infrastructure for global SARS-CoV-2 monitoring	2021	Wolfgang Maier Simon Bray Marius van den Beek Dave Bouvier Nathan Coraor Milad Miladi Babita Singh Jordi Rambla Dannon Baker Nathan Roach
+ PDF Chat	Rapid replacement of the Beta variant by the Delta variant in South Africa	2021	Houriiyah Tegally Eduan Wilkinson Christian L. Althaus Marta Giovanetti James Emmanuel San Jennifer Giandhari Sureshnee Pillay Yeshnee Naidoo Upasana Ramphal Nokukhanya Msomi
+	HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens	2021	Will Fischer Elena E. Giorgi Srirupa Chakraborty Kien Nguyen Tanmoy Bhattacharya James Theiler Pablo A. Goloboff Hyejin Yoon W. P. Abfalterer Brian Foley
+	A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa	2021	Eduan Wilkinson Marta Giovanetti Houriiyah Tegally James Emmanuel San Richard Lessels Diego F. Cuadros Darren P. Martin Abdel‐Rahman N. Zekri Abdoul Karim Sangaré Abdoul–Salam Ouédraogo
+ PDF Chat	Sixteen novel lineages of SARS-CoV-2 in South Africa	2021	Houriiyah Tegally Eduan Wilkinson Richard Lessells Jennifer Giandhari Sureshnee Pillay Nokukhanya Msomi Koleka Mlisana Jinal N. Bhiman Anne von Gottberg Sibongile Walaza

Common Coauthors

Coauthor	Papers Together
Houriiyah Tegally	8
Eduan Wilkinson	8
Túlio de Oliveira	8
Sureshnee Pillay	6
Richard Lessells	6
Jennifer Giandhari	6
Marta Giovanetti	6
Wolfgang Preiser	5
Susan Engelbrecht	5
Dominique Goedhals	5
Yeshnee Naidoo	5
Carolyn Williamson	5
Lavanya Singh	5
Gert U. van Zyl	5
Arash Iranzadeh	4
Cheryl Baxter	4
Mushal Allam	4
Derek Tshiabuila	4
Monika Moir	4
Anne von Gottberg	4
Jinal N. Bhiman	4
Vagner Fonseca	4
Upasana Ramphal	4
Marvin Hsiao	4
James Emmanuel San	4
Arshad Ismail	4
Thabo Mohale	4
Luíz Carlos Júnior Alcântara	3
Gert Marais	3
Koleka Mlisana	3
Wonderful T. Choga	3
Arisha Maharaj	3
Sofonias K. Tessema	3
Nokukhanya Msomi	3
Deelan Doolabh	3
Stephanie van Wyk	3
Joicymara Xavier	3
Ugochukwu J. Anyaneji	3
Yajna Ramphal	3
Martin M. Nyaga	3
Diana Hardie	3
James Emmanuel San	3
Lucious Chabuka	3
Faustinos Tatenda Takawira	2
Haruka Abe	2
Daniel Lule Bugembe	2
Sonia Etenna Lekana-Douki	2
Charles N. Agoti	2
Madisa Mine	2
Patrick Semanda	2

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+ PDF Chat	GISAID: Global initiative on sharing all influenza data – from vision to reality	2017	Yuelong Shu John W. McCauley	6
+	Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus	2020	Bette Korber Will Fischer S. Gnanakaran Hyejin Yoon James Theiler W. P. Abfalterer Nicolas Hengartner Elena E. Giorgi Tanmoy Bhattacharya Brian Foley	5
+ PDF Chat	Sixteen novel lineages of SARS-CoV-2 in South Africa	2021	Houriiyah Tegally Eduan Wilkinson Richard Lessells Jennifer Giandhari Sureshnee Pillay Nokukhanya Msomi Koleka Mlisana Jinal N. Bhiman Anne von Gottberg Sibongile Walaza	4
+ PDF Chat	Estimating excess mortality due to the COVID-19 pandemic: a systematic analysis of COVID-19-related mortality, 2020–21	2022	Haidong Wang Katherine Paulson Spencer A Pease Stefanie Watson Haley Comfort Peng Zheng Aleksandr Y. Aravkin Catherine Bisignano Ryan M Barber Shazia Alam	3
+	Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2	2020	Jana S. Huisman Jérémie Scire Daniel C. Angst Jinzhou Li Richard A. Neher Marloes H. Maathuis Sebastian Bonhoeffer Tanja Stadler	2
+ PDF Chat	Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK	2021	Louis du Plessis John T. McCrone Alexander E. Zarebski Verity Hill Christopher Ruis Bernardo Gutiérrez Jayna Raghwani Jordan Ashworth Rachel Colquhoun Thomas R. Connor	2
+	Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia	2020	Qun Li Xuhua Guan Peng Wu Xiaoye Wang Lei Zhou Yeqing Tong Ruiqi Ren Kathy Leung Eric H. Y. Lau Jessica Y. Wong	2
+ PDF Chat	The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance	2022	Houriiyah Tegally James Emmanuel San Matthew Cotten Monika Moir Bryan Tegomoh Gerald Mboowa Darren P. Martin Cheryl Baxter Arnold W. Lambisia Amadou Diallo	2
+	Understanding an evolving pandemic: An analysis of the clinical time delay distributions of COVID-19 in the United Kingdom	2021	Thomas Ward Alexander Johnsen	2
+ PDF Chat	Introductions and early spread of SARS-CoV-2 in the New York City area	2020	Ana S. González-Reiche Matthew M. Hernandez Mitchell J. Sullivan Brianne Ciferri Hala Alshammary Ajay Obla Shelcie Fabre Giulio Kleiner José Polanco Zenab Khan	2
+ PDF Chat	SARS-CoV-2 diagnostic testing rates determine the sensitivity of genomic surveillance programs	2022	Alvin X. Han Amy Toporowski Jilian A. Sacks Mark D. Perkins Sylvie Briand Maria D. Van Kerkhove Emma Hannay Sergio Carmona Bill Rodriguez Edyth Parker	2
+	Increased transmissibility and global spread of SARS-CoV-2 variants of concern as at June 2021	2021	Finlay Campbell Brett N. Archer Henry Laurenson‐Schafer Yuka Jinnai Frank Konings Neale Batra Boris Pavlin Katelijn Vandemaele Maria D. Van Kerkhove Thibaut Jombart	2
+	ggplot2	2011	Hadley Wickham	2
+	A SARS-CoV-2 lineage A variant (A.23.1) with altered spike has emerged and is dominating the current Uganda epidemic	2021	Daniel Lule Bugembe My V. T. Phan Isaac Ssewanyana Patrick Semanda Hellen Nansumba Beatrice Dhaala Susan Nabadda Áine O’Toole Andrew Rambaut Pontiano Kaleebu	2
+	Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report	2020	Jennifer Giandhari Sureshnee Pillay Eduan Wilkinson Houriiyah Tegally Ilya Sinayskiy Maria Schuld José Lourenço Benjamin Chimukangara Richard Lessells Mahomed‐Yunus S. Moosa	2
+	Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence	2021	Moritz U. G. Kraemer Verity Hill Christopher Ruis Simon Dellicour Sumali Bajaj John T. McCrone Guy Baele Kris V. Parag Anya Lindström Battle Bernardo Gutiérrez	2
+ PDF Chat	Use of Available Data To Inform The COVID-19 Outbreak in South Africa: A Case Study	2020	Vukosi Marivate Herkulaas Combrink	2
+ PDF Chat	Temporal dynamics in viral shedding and transmissibility of COVID-19	2020	Xi He Eric H. Y. Lau Peng Wu Xilong Deng Jian Wang Xinxin Hao Yiu Chung Lau Jessica Y. Wong Yujuan Guan Xinghua Tan	1
+	The effect of human mobility and control measures on the COVID-19 epidemic in China	2020	Moritz U. G. Kraemer Chia-Hung Yang Bernardo Gutiérrez Chieh‐Hsi Wu Brennan Klein David M. Pigott Louis du Plessis Nuno R. Faria Ruoran Li William P. Hanage	1
+	Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015–16: a modelling study	2016	Moritz U. G. Kraemer Nuno R. Faria Robert C. Reiner Nick Golding Birgit Nikolay Stephanie Stasse Michael A. Johansson Henrik Salje Ousmane Faye William Wint	1
+ PDF Chat	The effect of travel restrictions on the spread of the 2019 novel coronavirus (COVID-19) outbreak	2020	Matteo Chinazzi Jessica T. Davis Marco Ajelli Corrado Gioannini Maria Litvinova Stefano Merler Ana Pastore y Piontti Kunpeng Mu Luca Rossi Kaiyuan Sun	1
+	Estimated Marginal Means, aka Least-Squares Means [R package emmeans version 1.7.0]	2021	Russell V. Lenth	1
+ PDF Chat	The Impact of Vaccination on Coronavirus Disease 2019 (COVID-19) Outbreaks in the United States	2021	Seyed M. Moghadas Thomas N. Vilches Kevin Zhang Chad R. Wells Affan Shoukat Burton H. Singer Lauren Ancel Meyers Kathleen M. Neuzil Joanne M. Langley Meagan C. Fitzpatrick	1
+	Neuroprotective immunity by essential nutrient “Choline” for the prevention of SARS CoV2 infections: An in silico study by molecular dynamics approach	2020	Papia Chowdhury Pustak Pathak	1
+	Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya	2021	George Githinji Zaydah R. de Laurent Khadija Said Mohammed Donwilliams O. Omuoyo Peter M. Macharia John Mwita Morobe Edward Otieno Samson Kinyanjui Ambrose Agweyu Eric K. Maitha	1
+	A cross-country database of COVID-19 testing	2020	Joe Hasell Edouard Mathieu Diana Beltekian Bobbie Macdonald Charlie Giattino Esteban Ortiz-Ospina Max Roser Hannah Ritchie	1
+	Lockdown measures in response to COVID-19 in nine sub-Saharan African countries	2020	Najmul Haider Abdinasir Yusuf Osman A. Gadzekpo George O. Akipede Danny Asogun Rashid Ansumana Richard Lessells Palwasha Khan Muzamil Mahdi Abdel Hamid Dorothy Yeboah‐Manu	1
+	Mobile device data reveal the dynamics in a positive relationship between human mobility and COVID-19 infections	2020	Chenfeng Xiong Songhua Hu Mofeng Yang Weiyu Luo Lei Zhang	1
+	Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020	2020	Emma B. Hodcroft Moira Zuber Sarah Nadeau Timothy G. Vaughan Katharine H. D. Crawford Christian L. Althaus Martina L. Reichmuth John E. Bowen Alexandra C. Walls Davide Corti	1
+	Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity	2020	Erik Volz Verity Hill John T. McCrone Anna Price David Jorgensen Áine O’Toole Joel Southgate Robert A. Johnson Ben Jackson Fabrícia F. Nascimento	1
+ PDF Chat	Reconstructing influenza incidence by deconvolution of daily mortality time series	2009	Edward Goldstein Jonathan Dushoff Junling Ma Joshua B. Plotkin David J. D. Earn Marc Lipsitch	1
+	Bayesian analysis of elapsed times in continuous‐time Markov chains	2008	Marco A. R. Ferreira Marc A. Suchard	1
+	Delaying the COVID‐19 epidemic in Australia: evaluating the effectiveness of international travel bans	2020	Adeshina I. Adekunle Michael T. Meehan Diana Rojas-Alvarez James M. Trauer Emma S. McBryde	1
+	Reduction in mobility and COVID-19 transmission	2021	Pierre Nouvellet Sangeeta Bhatia Anne Cori Kylie E. C. Ainslie Marc Baguelin Samir Bhatt Adhiratha Boonyasiri Nicholas F. Brazeau Lorenzo Cattarino Laura Cooper	1
+	A novel coronavirus outbreak of global health concern	2020	Chen Wang Peter Horby Frederick G. Hayden George F. Gao	1
+	COVID-19 in Egypt: Uncovered figures or a different situation?	2020	Mohammed A. Medhat Mohamed El‐Kassas	1
+ PDF Chat	Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England	2020	Nicholas G. Davies Sam Abbott Rosanna C. Barnard Christopher Jarvis Adam J. Kucharski James D. Munday Carl A. B. Pearson Timothy Russell Damien C. Tully Alex Washburne	1
+	Transmission of SARS-CoV-2 Lineage B.1.1.7 in England: Insights from linking epidemiological and genetic data	2021	Erik Volz Swapnil Mishra Meera Chand Jeffrey C. Barrett Robert Johnson Lily Geidelberg Wes Hinsley Daniel J. Laydon Gavin Dabrera Áine O’Toole	1
+ PDF Chat	Emergence of SARS-CoV-2 through recombination and strong purifying selection	2020	Xiaojun Li Elena E. Giorgi Manukumar Honnayakanahalli Marichannegowda Brian Foley Chuan Xiao Xiang‐Peng Kong Yue Chen S. Gnanakaran Bette Korber Feng Gao	1
+ PDF Chat	Worldwide Reduction in MERS Cases and Deaths since 2016	2019	Christl A. Donnelly Mamun Malik Amgad Elkholy Simon Cauchemez Maria D. Van Kerkhove	1
+	COVID-19 deaths detected in a systematic post-mortem surveillance study in Africa	2020	Lawrence Mwananyanda Christopher Gill William MacLeod Geoffrey Kwenda Rachel Pieciak Zachariah Mupila Francis Mupeta Leah S. Forman Luunga Ziko Lauren Etter	1
+ PDF Chat	A New Framework and Software to Estimate Time-Varying Reproduction Numbers During Epidemics	2013	Anne Cori Neil M. Ferguson Christophe Fraser Simon Cauchemez	1
+ PDF Chat	Practical considerations for measuring the effective reproductive number, Rt	2020	Katelyn M. Gostic Lauren McGough Edward B. Baskerville Sam Abbott Keya Joshi Christine Tedijanto Rebecca Kahn René Niehus James A. Hay Pablo M. De Salazar	1
+ PDF Chat	Country-level determinants of the severity of the first global wave of the COVID-19 pandemic: an ecological study	2021	Tiberiu A. Pana Sohinee Bhattacharya David Gamble Zahra Pasdar Weronika A. Szlachetka Jesus A Perdomo-Lampignano Kai D Ewers David J. McLernon Phyo Kyaw Myint	1
+	Inferring the effectiveness of government interventions against COVID-19	2020	Jan Brauner Sören Mindermann Mrinank Sharma David Johnston John Salvatier Tomáš Gavenčiak Anna B. Stephenson Gavin Leech George Altman Vladimir Mikulik	1
+ PDF Chat	Correlates of protection against SARS-CoV-2 in rhesus macaques	2020	Katherine McMahan Jingyou Yu Noe B. Mercado Carolin Loos Lisa H. Tostanoski Abishek Chandrashekar Jinyan Liu Lauren Peter Caroline Atyeo Alex Zhu	1
+ PDF Chat	Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak	2018	Simon Dellicour Guy Baele Gytis Dudas Nuno R. Faria Oliver G. Pybus Marc A. Suchard Andrew Rambaut Philippe Lemey	1
+ PDF Chat	Covid-19 deaths in Africa: prospective systematic postmortem surveillance study	2021	Lawrence Mwananyanda Christopher Gill William MacLeod Geoffrey Kwenda Rachel Pieciak Zachariah Mupila Rotem Lapidot Francis Mupeta Leah S. Forman Luunga Ziko	1
+ PDF Chat	Assessing sub-regional-specific strengths of healthcare systems associated with COVID-19 prevalence, deaths and recoveries in Africa	2021	Iddrisu Amadu Bright Opoku Ahinkorah Abdul‐Rahaman Afitiri Abdul‐Aziz Seidu Edward Kwabena Ameyaw John Elvis Hagan Eric Duku Simon Appah Aram	1
+	COVID-19 lockdown induces disease-mitigating structural changes in mobility networks	2020	Frank Schlosser Benjamin F. Maier Olivia Jack David J. Hinrichs Adrian Zachariae Dirk Brockmann	1