Steven G. Deeks

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All published works

Action	Title	Year	Authors
+ PDF Chat	Plasma-based antigen persistence in the post-acute phase of SARS-CoV-2 infection	2023	Michael J. Peluso Zoe Swank Sarah A. Goldberg Scott Lu Thomas Dalhuisen Ella Borberg Yasmeen Senussi Michael Luna Celina Chang Song Alexus Clark
+ PDF Chat	SARS-CoV-2 Serology Across Scales: A Framework for Unbiased Estimation of Cumulative Incidence Incorporating Antibody Kinetics and Epidemic Recency	2023	Saki Takahashi Michael J. Peluso Jill Hakim Keirstinne Turcios Owen Janson Isobel Routledge Michael P. Busch Rebecca Hoh Viva Tai J. Daniel Kelly
+ PDF Chat	Association of Culturable-Virus Detection and Household Transmission of SARS-CoV-2, California and Tennessee, 2020–2022	2023	Jessica E. Deyoe J. Daniel Kelly Carlos G. Grijalva Gaston Bonenfant Scott Lu Khamal Anglin Miguel Garcia-Knight Jesus Pineda-Ramirez Melissa Briggs Hagen Sharon Saydah
+ PDF Chat	Magnitude and Determinants of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Household Transmission: A Longitudinal Cohort Study	2022	J. Daniel Kelly Scott Lu Khamal Anglin Miguel Garcia-Knight Jesus Pineda-Ramirez Sarah A. Goldberg Michel Tassetto Amethyst Zhang Kevin C. Donohue Michelle C. Davidson
+	Infectious viral shedding of SARS-CoV-2 Delta following vaccination: a longitudinal cohort study	2022	Miguel Garcia-Knight Khamal Anglin Michel Tassetto Scott Lu Amethyst Zhang Sarah A. Goldberg Adam Catching Michelle C. Davidson Joshua R. Shak Mariela Romero
+	SARS-CoV-2 serology across scales: a framework for unbiased seroprevalence estimation incorporating antibody kinetics and epidemic recency	2021	Saki Takahashi Michael J. Peluso Jill Hakim Keirstinne Turcios Owen Janson Isobel Routledge Michael P. Busch Rebecca Hoh Viva Tai J. Daniel Kelly
+	Post-Mrna Vaccination SARS-CoV-2 IGG Concentrations and Surrogate Virus Neutralization Response Compared by HIV Status and Type of Vaccine: A Matched Case-Control Observational Study	2021	Matthew A. Spinelli Michael J. Peluso Kara L. Lynch Cassandra Yun David V. Glidden Timothy J. Henrich Steven G. Deeks Monica Gandhi
+ PDF Chat	Emulating a trial of joint dynamic strategies: An application to monitoring and treatment of HIV‐positive individuals	2019	Ellen C. Caniglia James M. Robins Lauren E. Cain Caroline Sabin Roger Logan Sophie Abgrall Michael J. Mugavero Sonia Hernández–Dı́az Laurence Meyer Rémonie Seng
+ PDF Chat	Using observational data to emulate a randomized trial of dynamic treatment switching strategies	2016	Lauren E. Cain Michael S Saag Maya Petersen Margaret May Suzanne M Ingle Roger Logan James M. Robins Sophie Abgrall Bryan E. Shepherd Steven G. Deeks
+ PDF Chat	History-adjusted Marginal Structural Models for Estimating Time-varying Effect Modification	2007	Maya Petersen Steven G. Deeks Jeffery N Martin Mark J. van der Laan
+ PDF Chat	Individualized treatment rules: Generating candidate clinical trials	2007	Maya Petersen Steven G. Deeks Mark J. van der Laan

Common Coauthors

Coauthor	Papers Together
Michael J. Peluso	7
Jeffrey N. Martin	6
J. Daniel Kelly	6
Timothy J. Henrich	4
Scott Lu	4
Khamal Anglin	4
Sarah A. Goldberg	4
Michel Tassetto	3
Miguel Garcia-Knight	3
Glen R. Abedi	3
Kevin C. Donohue	3
Joshua R. Shak	3
Manuella Djomaleu	3
Raul Andino	3
Sujata Mathur	3
Sharon Saydah	3
Charles Y. Chiu	3
Jesus Pineda-Ramirez	3
Rebecca Hoh	3
Ruth Diaz Sanchez	3
Michelle C. Davidson	3
Matthias Egger	2
Heiner C. Bucher	2
Isobel Routledge	2
Sonia Napravnik	2
Giota Touloumi	2
Michael P. Busch	2
Michael J. Mugavero	2
David V. Glidden	2
Richard D. Moore	2
Maya Petersen	2
James M. Robins	2
Melissa Briggs‐Hagen	2
Keirstinne Turcios	2
Jill Hakim	2
Owen Janson	2
Melissa A. Rolfes	2
Viva Tai	2
Mariela Romero	2
Amy C. Justice	2
Claire M. Midgley	2
Matthew A. Spinelli	2
Dominique Costagliola	2
Isabel Rodríguez-Barraquer	2
Bryan Greenhouse	2
Peter Reiss	2
Joseph J. Eron	2
Amethyst Zhang	2
Roger Logan	2
Saki Takahashi	2

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+ PDF Chat	History-Adjusted Marginal Structural Models and Statically-Optimal Dynamic Treatment Regimens	2005	Mark J. van der Laan Maya Petersen Marshall M. Joffe	2
+ PDF Chat	Practical considerations for measuring the effective reproductive number, Rt	2020	Katelyn M. Gostic Lauren McGough Edward B. Baskerville Sam Abbott Keya Joshi Christine Tedijanto Rebecca Kahn René Niehus James A. Hay Pablo M. De Salazar	2
+ PDF Chat	Three-quarters attack rate of SARS-CoV-2 in the Brazilian Amazon during a largely unmitigated epidemic	2021	Lewis Buss Carlos A. Prete Claudia M. M. Abrahim Alfredo Mendrone Tassila Salomon Cesar de Almeida‐Neto Rafael Freitas de Oliveira França Maria Carolina T. D. Belotti Maria P. S. S. Carvalho Allyson Guimarães Costa	2
+	Levels of SARS-CoV-2 population exposure are considerably higher than suggested by seroprevalence surveys	2021	Siyu Chen Jennifer A. Flegg Lisa J. White Ricardo Águas	2
+	Comparison of Dynamic Treatment Regimes via Inverse Probability Weighting	2006	Miguel A. Hernán Émilie Lanoy Dominique Costagliola James M. Robins	2
+	Serological evidence of human infection with SARS-CoV-2: a systematic review and meta-analysis	2021	Xinhua Chen Zhiyuan Chen Andrew S. Azman Xiaowei Deng Ruijia Sun Zeyao Zhao Nan Zheng Xinghui Chen Wanying Lu Tingyu Zhuang	2
+	Estimating the Cumulative Incidence of SARS-CoV-2 Infection and the Infection Fatality Ratio in Light of Waning Antibodies	2021	Kayoko Shioda Max S. Y. Lau Alicia N.M. Kraay Kristin N. Nelson Aaron J. Siegler Patrick S. Sullivan Matthew H. Collins Joshua S. Weitz Benjamin A. Lopman	2
+	A new approach to causal inference in mortality studies with a sustained exposure period—application to control of the healthy worker survivor effect	1986	James M. Robins	2
+	Marginal Structural Models versus Structural nested Models as Tools for Causal inference	2000	James M. Robins	2
+	Marginal Structural Models to Estimate the Causal Effect of Zidovudine on the Survival of HIV-Positive Men	2000	Miguel A. Hernán Babette Brumback James M. Robins	2
+	Marginal Structural Models and Causal Inference in Epidemiology	2000	James M. Robins Miguel A. Hernán Babette Brumback	2
+ PDF Chat	Incubation Period and Other Epidemiological Characteristics of 2019 Novel Coronavirus Infections with Right Truncation: A Statistical Analysis of Publicly Available Case Data	2020	Natalie M. Linton T. Kobayashi Yichi Yang Katsuma Hayashi Andrei R. Akhmetzhanov Sung-mok Jung Baoyin Yuan Ryo Kinoshita Hiroshi Nishiura	2
+	Estimates of the severity of coronavirus disease 2019: a model-based analysis	2020	Robert Verity Lucy Okell Ilaria Dorigatti Peter Winskill Charles Whittaker Natsuko Imai Gina Cuomo-Dannenburg Hayley Thompson Patrick Walker Han Fu	2
+ PDF Chat	Epidemiology and transmission of COVID-19 in 391 cases and 1286 of their close contacts in Shenzhen, China: a retrospective cohort study	2020	Qifang Bi Yongsheng Wu Shujiang Mei Chenfei Ye Xuan Zou Zhen Zhang Xiaojian Liu Lan Wei Shaun Truelove Tong Zhang	2
+	Levels of SARS-CoV-2 population exposure are considerably higher than suggested by seroprevalence surveys	2021	Siyu Chen Jennifer A. Flegg Lisa J. White Ricardo Águas	2
+ PDF Chat	Estimating the burden of SARS-CoV-2 in France	2020	Henrik Salje Cécile Tran Kiem Noémie Lefrancq Noémie Courtejoie Paolo Bosetti Juliette Paireau Alessio Andronico Nathanaël Hozé Jehanne Richet Claire-Lise Dubost	2
+	Jointly modeling prevalence, sensitivity and specificity for optimal sample allocation	2020	Daniel B. Larremore Bailey K. Fosdick Sam Zhang Yonatan H. Grad	2
+ PDF Chat	Age-dependent effects in the transmission and control of COVID-19 epidemics	2020	Nicholas G. Davies Petra Klepac Yang Liu Kiesha Prem Mark Jit Carl A. B. Pearson Billy J. Quilty Adam J. Kucharski Hamish Gibbs Samuel Clifford	2
+	Community transmission and viral load kinetics of the SARS-CoV-2 delta (B.1.617.2) variant in vaccinated and unvaccinated individuals in the UK: a prospective, longitudinal, cohort study	2021	Anika Singanayagam Seran Hakki Jake Dunning Kieran J Madon Michael A. Crone Aleksandra Koycheva Nieves Derqui Jack L Barnett Michael G. Whitfield Robert Varro	2
+	Unified Methods for Censored Longitudinal Data and Causality	2003	Mark J. van der Laan James M. Robins	2
+ PDF Chat	Time variations in the transmissibility of pandemic influenza in Prussia, Germany, from 1918–19	2007	Hiroshi Nishiura	2
+	Bayesian Analysis of Tests with Unknown Specificity and Sensitivity	2020	Andrew Gelman Bob Carpenter	2
+ PDF Chat	A systematic review of antibody mediated immunity to coronaviruses: kinetics, correlates of protection, and association with severity	2020	Angkana T. Huang Bernardo García‐Carreras Matt D.T. Hitchings Bingyi Yang Leah C. Katzelnick Susan M Rattigan Brooke A. Borgert C Moreno Benjamin D. Solomon Luke Trimmer-Smith	2
+	Unpacking the Drop in COVID-19 Case Fatality Rates: A Study of National and Florida Line-Level Data	2020	Cheng Cheng Helen Zhou Jeremy C. Weiss Zachary C. Lipton	2
+	COVID-19 herd immunity in the Brazilian Amazon	2020	Lewis Buss Carlos A. Prete Claudia MM Abrahim Alfredo Mendrone Tassila Salomon Cesar de Almeida‐Neto Rafael Freitas de Oliveira França Maria Carolina T. D. Belotti Maria PSS Carvalho Allyson Guimarães Costa	2
+ PDF Chat	Estimating the cumulative incidence of SARS-CoV-2 infection and the infection fatality ratio in light of waning antibodies	2020	Kayoko Shioda Max S. Y. Lau Alicia N.M. Kraay Kristin N. Nelson Aaron J. Siegler Patrick S. Sullivan Matthew H. Collins Joshua S. Weitz Benjamin A. Lopman	2
+ PDF Chat	Optimal Dynamic Treatment Regimes	2003	Susan A. Murphy	2
+	Statistical Models in Epidemiology, the Environment, and Clinical Trials	2000	M. Elizabeth Halloran Donald A. Berry	2
+	Per-Protocol Analyses of Pragmatic Trials	2017	Miguel A. Hernán James M. Robins	1
+	Incubation Period and Other Epidemiological Characteristics of 2019 Novel Coronavirus Infections with Right Truncation: A Statistical Analysis of Publicly Available Case Data	2020	Natalie M. Linton T. Kobayashi Yichi Yang Katsuma Hayashi Andrei R. Akhmetzhanov Sung-mok Jung Baoyin Yuan Ryo Kinoshita Hiroshi Nishiura	1
+	Duration of SARS‐CoV‐2 detection in Israel Defense Forces soldiers with mild COVID‐19	2020	Tomer Talmy Adili Tsur Or Shabtay	1
+ PDF Chat	Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans	2020	José Mateus Alba Grifoni Alison Tarke John Sidney Sydney I. Ramirez Jennifer M. Dan Zoe C. Burger Stephen A. Rawlings Davey M. Smith Elizabeth J. Phillips	1
+	Report 34: COVID-19 Infection Fatality Ratio: Estimates from Seroprevalence	2020	N Brazeau Robert Verity Sara Jenks Han Fu Charles Whittaker Peter Winskill Ilaria Dorigatti Patrick Walker Steven Riley RP Schnekenberg	1
+	Unpacking the Drop in COVID-19 Case Fatality Rates: A Study of National and Florida Line-Level Data	2020	Chien‐Yu Cheng Helen Zhou Weiss Jc Lipton Zc	1
+	Towards an Accurate and Systematic Characterization of Persistently Asymptomatic Infection with SARS-CoV-2	2020	Eric A. Meyerowitz Aaron Richterman Isaac I. Bogoch Nicola Low Müge Çevik	1
+	Estimating infectiousness throughout SARS-CoV-2 infection course	2021	Terry C. Jones Guido Biele Barbara Mühlemann Talitha Veith Julia Schneider Jörn Beheim-Schwarzbach Tobias Bleicker Julia Tesch Marie Luisa Schmidt Leif Erik Sander	1
+	Daily sampling of early SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness	2021	Ruian Ke Pamela P. Martinez Rebecca L. Smith Laura Gibson Agha Zeeshan Mirza Madison Conte Nicholas Gallagher Chun Huai Luo Junko Jarrett Abigail Conte	1
+	Breakthrough Infections of SARS-CoV-2 Gamma Variant in Fully Vaccinated Gold Miners, French Guiana, 2021	2021	Nicolas Vignier V. Bérot Nathalie Bonnave Sandrine Peugny Mathilde Ballet Estelle Jacoud Céline Michaud Mélanie Gaillet Félix Djossou Denis Blanchet	1
+	Vaccination with BNT162b2 reduces transmission of SARS-CoV-2 to household contacts in Israel	2021	Ottavia Prunas Joshua L. Warren Forrest W. Crawford Sivan Gazit Tal Patalon Daniel M. Weinberger Virginia E. Pitzer	1
+ PDF Chat	Transmission dynamics and epidemiological characteristics of Delta variant infections in China	2021	Min Kang Hualei Xin Jun Yuan Sheikh Taslim Ali Zimian Liang Jiayi Zhang Ting Hu Eric H. Y. Lau Yingtao Zhang Meng Zhang	1
+	Vaccine effectiveness against SARS-CoV-2 transmission and infections among household and other close contacts of confirmed cases, the Netherlands, February to May 2021	2021	Brechje de Gier Stijn P. Andeweg Rosa Joosten Ronald ter Schegget Naomi Smorenburg Jan van de Kassteele Susan Hahné Susan van den Hof Hester E. de Melker Mirjam J. Knol	1
+	Outbreak of SARS-CoV-2 Infections, Including COVID-19 Vaccine Breakthrough Infections, Associated with Large Public Gatherings — Barnstable County, Massachusetts, July 2021	2021	Catherine Brown Johanna Vostok Hillary Johnson Meagan Burns Radhika Gharpure Samira Sami Rebecca T. Sabo Noémi B. Hall Anne Foreman Petra Schubert	1
+ PDF Chat	Impact of Delta Variant and Vaccination on SARS-CoV-2 Secondary Attack Rate Among Household Close Contacts	2021	Oon Tek Ng Vanessa Koh Calvin J. Chiew Kalisvar Marimuthu Natascha May Thevasagayam Tze Minn Mak Joon Kiat Chua Shannen Si Hui Ong Yong Kai Lim Zannatul Ferdous	1
+ PDF Chat	Viral loads of Delta-variant SARS-CoV-2 breakthrough infections after vaccination and booster with BNT162b2	2021	Matan Levine-Tiefenbrun Idan Yelin Hillel Alapi Rachel Katz Esma Herzel Jacob Kuint Gabriel Chodick Sivan Gazit Tal Patalon Roy Kishony	1
+ PDF Chat	On the Application of Probability Theory to Agricultural Experiments. Essay on Principles. Section 9	1990	Jerzy Splawa-Neyman D. M. Dabrowska Terence P. Speed	1
+	COVID-19 Breakthrough Infections and Transmission Risk: Real-World Data Analyses from Germany’s Largest Public Health Department (Cologne)	2021	Lea Hsu Barbara Grüne Michael Buess Christine Joisten Jan Klobucnik Johannes Nießen David A. Patten Anna Wolff Gerhard A. Wiesmüller Annelene Kossow	1
+	Characteristics and Outcomes of Hospitalized Patients in South Africa During the COVID-19 Omicron Wave Compared With Previous Waves	2021	Caroline Maslo Richard Friedland Mande Toubkin Anchen Laubscher Teshlin Akaloo Boniswa Kama	1
+ PDF Chat	Impact of BNT162b2 Vaccination and Isolation on SARS-CoV-2 Transmission in Israeli Households: An Observational Study	2022	Maylis Layan Mayan Gilboa Tal Gonen Miki Goldenfeld Lilac Meltzer Alessio Andronico Nathanaël Hozé Simon Cauchemez Gili Regev‐Yochay	1
+ PDF Chat	Household Secondary Attack Rates of SARS-CoV-2 by Variant and Vaccination Status	2022	Zachary J. Madewell Yang Yang Ira M. Longini M. Elizabeth Halloran Natalie E. Dean	1
+	Causal Diagrams for Epidemiologic Research	1999	Sander Greenland Judea Pearl James M. Robins	1