Jayna Raghwani

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All published works

Action	Title	Year	Authors
+	Genomic epidemiology of early SARS-CoV-2 transmission dynamics in Bangladesh	2024	Lorcan Carnegie J. T. McCrone Louis du Plessis Maruf Hasan Md Zulfikar Ali Rawshan Ara Begum M Z Hassan Md. Saiful Islam Md. Habibur Rahman A.S.M. Uddin
+ PDF Chat	Genomic epidemiology of early SARS-CoV-2 transmission dynamics in Bangladesh	2024	Lorcan Carnegie John T. McCrone Louis du Plessis Maruf Hasan Md Zulfikar Ali Rawshan Ara Begum M Z Hassan Md. Saiful Islam Md. Habibur Rahman A.S.M. Uddin
+ PDF Chat	Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1	2023	Joseph L.-H. Tsui Ben Lambert Sumali Bajaj John T. McCrone Rhys P. D. Inward Paolo Bosetti Verity Hill Rosario Evans Pena Alexander E. Zarebski Thomas P. Peacock
+ PDF Chat	Context-specific emergence and growth of the SARS-CoV-2 Delta variant	2022	John T. McCrone Verity Hill Sumali Bajaj Rosario Evans Pena Ben Lambert Rhys P. D. Inward Samir Bhatt Erik Volz Christopher Ruis Simon Dellicour
+ PDF Chat	Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning	2022	Sema Nickbakhsh Joseph Hughes Nicolaos Christofidis Emily Griffiths Sharif Shaaban Jessica Enright Katherine Smollett Kyriaki Nomikou Natasha Palmalux L. Tong
+ PDF Chat	Genomic Epidemiology of Early SARS-CoV-2 Transmission Dynamics, Gujarat, India	2022	Jayna Raghwani Louis du Plessis John T. McCrone Sarah C. Hill Kris V. Parag Julien Thézé Dinesh Kumar Apurvasinh Puvar Ramesh Pandit Oliver G. Pybus
+ PDF Chat	Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission	2022	Dinesh Aggarwal Andrew J. Page Ulf Schaefer George M. Savva Richard Myers Erik Volz Nicholas Ellaby Steven G. Platt Natalie Groves Eileen Gallagher
+ PDF Chat	Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission	2022	Dinesh Aggarwal Ben Warne Aminu S. Jahun William L. Hamilton Thomas Fieldman Louis du Plessis Verity Hill Beth Blane Emmeline Watkins Elizabeth Wright
+ PDF Chat	Context-specific emergence and growth of the SARS-CoV-2 Delta variant	2021	John T. McCrone Verity Hill Sumali Bajaj Rosario Evans Pena Ben Lambert Rhys P. D. Inward Samir Bhatt Erik Volz Christopher Ruis Simon Dellicour
+ PDF Chat	Context-specific emergence and growth of the SARS-CoV-2 Delta variant	2021	Moritz U. G. Kraemer John T. McCrone Verity Hill Sumali Bajaj Rosario Evans-Pena Ben Lambert Rhys P. D. Inward Samir Bhatt Erik Volz Christopher Ruis
+	Purifying selection determines the short-term time dependency of evolutionary rates in SARS-CoV-2 and pH1N1 influenza	2021	Mahan Ghafari Louis du Plessis Jayna Raghwani Samir Bhatt Bo Xu Oliver G. Pybus Aris Katzourakis
+ PDF Chat	Where do all the subtypes go? Temporal dynamics of H8–H12 influenza A viruses in waterfowl	2018	Michelle Wille Neus Latorre‐Margalef Conny Tolf Rebecca Halpin David E. Wentworth Ron A. M. Fouchier Jayna Raghwani Oliver G. Pybus Björn Olsén Jonas Waldenström

Common Coauthors

Coauthor	Papers Together
Louis du Plessis	10
Oliver G. Pybus	10
Andrew Rambaut	9
Erik Volz	7
Verity Hill	7
Nicholas J. Loman	7
Thomas R. Connor	7
Áine O’Toole	7
David M. Aanensen	6
Gavin Dabrera	6
Katherine A. Twohig	6
Richard Myers	5
Rachel Colquhoun	5
Ben Jackson	5
Meera Chand	5
Marc A. Suchard	4
Moritz U. G. Kraemer	4
Thomas P. Peacock	4
Rhys P. D. Inward	4
Samir Bhatt	4
Ben Lambert	4
Isaac I. Bogoch	4
Simon Dellicour	4
Xiang Ji	4
Kamran Khan	4
Neo Wu	4
Bernardo Gutiérrez	4
Jeffrey C. Barrett	4
Alexander E. Zarebski	4
Christophe Fraser	4
Sumali Bajaj	4
John T. McCrone	4
Steven Liggett	3
Richard Eccles	3
Alex E. Zarebski	3
Stephen Campbell	3
Manon Ragonnet‐Cronin	3
Kelly Bicknell	3
Nicola Sheriff	3
Colin P. Smith	3
John A. Todd	3
Sharon J. Peacock	3
Johnny Debebe	3
Emma C. Thomson	3
Jon-Paul Keatley	3
Sarah Wyllie	3
Nichola Duckworth	3
Joshua Maksimovic	3
Thomas Helmer	3
Christopher Fearn	3

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+ PDF Chat	Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK	2021	Louis du Plessis John T. McCrone Alexander E. Zarebski Verity Hill Christopher Ruis Bernardo Gutiérrez Jayna Raghwani Jordan Ashworth Rachel Colquhoun Thomas R. Connor	9
+	Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence	2021	Moritz U. G. Kraemer Verity Hill Christopher Ruis Simon Dellicour Sumali Bajaj John T. McCrone Guy Baele Kris V. Parag Anya Lindström Battle Bernardo Gutiérrez	5
+ PDF Chat	GISAID: Global initiative on sharing all influenza data – from vision to reality	2017	Yuelong Shu John W. McCauley	4
+	Spread of a SARS-CoV-2 variant through Europe in the summer of 2020	2021	Emma B. Hodcroft Moira Zuber Sarah Nadeau Timothy G. Vaughan Katharine H. D. Crawford Christian L. Althaus Martina L. Reichmuth John E. Bowen Alexandra C. Walls Davide Corti	4
+ PDF Chat	An investigation of transmission control measures during the first 50 days of the COVID-19 epidemic in China	2020	Huaiyu Tian Youngjoon Hong Yidan Li Chieh‐Hsi Wu Бин Чэн Moritz U. G. Kraemer Bingying Li Jun Cai Bo Xu Qiqi Yang	3
+ PDF Chat	Efficient and targeted COVID-19 border testing via reinforcement learning	2021	Hamsa Bastani Kimon Drakopoulos Vishal Gupta Ioannis Vlachogiannis Christos Hadjichristodoulou Παγώνα Λάγιου Gkikas Magiorkinis Dimitrios Paraskevis Sotirios Tsiodras	3
+ PDF Chat	Improved estimation of time-varying reproduction numbers at low case incidence and between epidemic waves	2021	Kris V. Parag	3
+	Roles of generation-interval distributions in shaping relative epidemic strength, speed, and control of new SARS-CoV-2 variants	2021	Sang Woo Park Benjamin M. Bolker Sebastian Funk C. Jessica E. Metcalf Joshua S. Weitz Bryan T. Grenfell Jonathan Dushoff	3
+ PDF Chat	Serial interval of SARS-CoV-2 was shortened over time by nonpharmaceutical interventions	2020	Sheikh Taslim Ali Lin Wang Eric H. Y. Lau Xiao-Ke Xu Zhanwei Du Ye Wu GM Leung Benjamin J. Cowling	3
+	Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant	2021	Paul Elliott David Haw Haowei Wang Oliver Eales Caroline E. Walters Kylie E. C. Ainslie Christina Atchison Claudio Fronterrè Peter J. Diggle Andrew J. Page	3
+ PDF Chat	Temporal signal and the phylodynamic threshold of SARS-CoV-2	2020	Sebastián Duchêne Leo Featherstone Melina Haritopoulou-Sinanidou Andrew Rambaut Philippe Lemey Guy Baele	3
+	Travelling waves and spatial hierarchies in measles epidemics	2001	Bryan T. Grenfell Ottar N. Bjørnstad Jens Kappey	3
+	Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India	2021	Mahesh Shanker Dhar Robin Marwal Radhakrishnan VS Kalaiarasan Ponnusamy Bani Jolly Rahul C. Bhoyar Viren Sardana Salwa Naushin Mercy Rophina Thomas A. Mellan	3
+ PDF Chat	Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza	2022	Mahan Ghafari Louis du Plessis Jayna Raghwani Samir Bhatt Bo Xu Oliver G. Pybus Aris Katzourakis	3
+	Coronavirus variants are spreading in India — what scientists know so far	2021	Gayathri Vaidyanathan	3
+	Monitoring key epidemiological parameters of SARS-CoV-2 transmission	2021	Moritz U. G. Kraemer Oliver G. Pybus Christophe Fraser Simon Cauchemez Andrew Rambaut Benjamin J. Cowling	3
+ PDF Chat	Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA	2022	Rebecca Earnest Rockib Uddin Nicholas Matluk Nicholas Renzette Sarah E. Turbett Katherine J. Siddle Christine Loreth Gordon Adams Christopher H. Tomkins-Tinch Mary E. Petrone	3
+ PDF Chat	Sixteen novel lineages of SARS-CoV-2 in South Africa	2021	Houriiyah Tegally Eduan Wilkinson Richard Lessells Jennifer Giandhari Sureshnee Pillay Nokukhanya Msomi Koleka Mlisana Jinal N. Bhiman Anne von Gottberg Sibongile Walaza	3
+ PDF Chat	Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand	2020	Jemma L. Geoghegan Xiaoyun Ren Matthew Storey James Hadfield Lauren Jelley Sarah Jefferies Jill Sherwood Shevaun Paine Q. Sue Huang Jordan Douglas	3
+	Genomics, social media and mobile phone data enable mapping of SARS-CoV-2 lineages to inform health policy in Bangladesh	2021	Lauren A. Cowley Mokibul Hassan Afrad Sadia Isfat Ara Rahman Md Mahfuz Al Mamun Taylor Chin Ayesha S. Mahmud Mohammed Ziaur Rahman Mallick Masum Billah Manjur Hossain Khan Sharmin Sultana	2
+	Commentary on Ferguson, et al., “Impact of Non-pharmaceutical Interventions (NPIs) to Reduce COVID-19 Mortality and Healthcare Demand”	2020	Stephen Eubank Irene Eckstrand Bryan Lewis Srinivasan Venkatramanan Madhav Marathe Christopher L. Barrett	2
+ PDF Chat	Burden and characteristics of COVID-19 in the United States during 2020	2021	Sen Pei Teresa K. Yamana Sasikiran Kandula Marta Galanti Jeffrey Shaman	2
+ PDF Chat	A review and agenda for integrated disease models including social and behavioural factors	2021	Jamie Bedson Laura Skrip Danielle Pedi Sharon Abramowitz Simone Carter Mohamed F. Jalloh Sebastian Funk Nina Gobat Tamara Giles‐Vernick Gerardo Chowell	2
+	Increased transmissibility and global spread of SARS-CoV-2 variants of concern as at June 2021	2021	Finlay Campbell Brett N. Archer Henry Laurenson‐Schafer Yuka Jinnai Frank Konings Neale Batra Boris Pavlin Katelijn Vandemaele Maria D. Van Kerkhove Thibaut Jombart	2
+	Managing COVID-19 importation risks in a heterogeneous world	2021	Simon Cauchemez Cécile Tran Kiem	2
+	Ignoring spatial heterogeneity in drivers of SARS-CoV-2 transmission in the US will impede sustained elimination	2021	Zachary Susswein Eugenio Valdano Tobias Brett Pejman Rohani Vittoria Colizza Shweta Bansal	2
+	Resurgence of SARS-CoV-2 in India: Potential role of the B.1.617.2 (Delta) variant and delayed interventions	2021	Maxwell Salvatore Rupam Bhattacharyya Soumik Purkayastha Lauren Zimmermann Debashree Ray Aditi Hazra Michael Kleinsasser Thomas A. Mellan Charles Whittaker Seth Flaxman	2
+	Vaccine nationalism and the dynamics and control of SARS-CoV-2	2021	Caroline E. Wagner Chadi M. Saad-Roy Sinead E. Morris Rachel E. Baker Michael J. Mina Jeremy Farrar Edward C. Holmes Oliver G. Pybus Andrea L. Graham Ezekiel Emanuel	2
+ PDF Chat	Rapid replacement of the Beta variant by the Delta variant in South Africa	2021	Houriiyah Tegally Eduan Wilkinson Christian L. Althaus Marta Giovanetti James Emmanuel San Jennifer Giandhari Sureshnee Pillay Yeshnee Naidoo Upasana Ramphal Nokukhanya Msomi	2
+ PDF Chat	Population impact of SARS-CoV-2 variants with enhanced transmissibility and/or partial immune escape	2021	Mary Bushman Rebecca Kahn Bradford P. Taylor Marc Lipsitch William P. Hanage	2
+	Assessment of basic reproduction number (R0), spatial and temporal epidemiological determinants, and genetic characterization of SARS-CoV-2 in Bangladesh	2021	Ariful Islam Md. Abu Sayeed Md. Kaisar Rahman Shafayat Zamil Josefina Abedin Otun Saha Mohammad Mahmudul Hassan	2
+ PDF Chat	Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England	2021	Nicholas G. Davies Sam Abbott Rosanna C. Barnard Christopher I Jarvis Adam J. Kucharski James D. Munday Carl A. B. Pearson Timothy Russell Damien C. Tully Alex Washburne	2
+	Surging COVID-19 in Bangladesh driven by B.1.351 variant	2021	Eric Brum Senjuti Saha Ayesha Sania Arif Mohammad Tanmoy Yogesh Hooda Afroza Akter Tanni Sharmistha Goswami Syed Muktadir Al Sium Mohammad Saiful Islam Sajib Roly Malaker	2
+ PDF Chat	Impact of population density and weather on COVID-19 pandemic and SARS-CoV-2 mutation frequency in Bangladesh	2021	Nadim Sharif Shuvra Kanti Dey	2
+	Bayesian analysis of elapsed times in continuous‐time Markov chains	2008	Marco A. R. Ferreira Marc A. Suchard	2
+ PDF Chat	Estimating internationally imported cases during the early COVID-19 pandemic	2021	Tigist F. Menkir Taylor Chin James A. Hay Erik D. Surface Pablo M. De Salazar Caroline O. Buckee Alexander Watts Kamran Khan Ryan Sherbo Ada W. C. Yan	2
+	The impact of mobility network properties on predicted epidemic dynamics in Dhaka and Bangkok	2021	Tyler S. Brown Kenth Engø‐Monsen Mathew V. Kiang Ayesha S. Mahmud Richard J. Maude Caroline O. Buckee	2
+ PDF Chat	Disease and healthcare burden of COVID-19 in the United States	2020	Ian F. Miller Alexander D. Becker Bryan T. Grenfell C. Jessica E. Metcalf	2
+ PDF Chat	Will the Higher-Income Country Blueprint for COVID-19 Work in Low- and Lower Middle-Income Countries?	2020	Stephen Hodgins Abdulmumin Saad	2
+ PDF Chat	Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel	2020	Danielle Miller Michael A. Martin Noam Harel Omer Tirosh Talia Kustin Moran Meir Nadav Sorek Shiraz Gefen-Halevi Sharon Amit Olesya Vorontsov	2
+	Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020	2020	Emma B. Hodcroft Moira Zuber Sarah Nadeau Timothy G. Vaughan Katharine H. D. Crawford Christian L. Althaus Martina L. Reichmuth John E. Bowen Alexandra C. Walls Davide Corti	2
+ PDF Chat	Strategic assessment of COVID-19 pandemic in Bangladesh: comparative lockdown scenario analysis, public perception, and management for sustainability	2020	Mashura Shammi Md. Bodrud-Doza Abu Reza Md. Towfiqul Islam Md. Mostafizur Rahman	2
+ PDF Chat	Evolution and epidemic spread of SARS-CoV-2 in Brazil	2020	Darlan S. Candido Ingra Morales Claro Jaqueline Góes de Jesus William Marciel de Souza Filipe Romero Rebello Moreira Simon Dellicour Thomas A. Mellan Louis du Plessis Rafael H. M. Pereira Flavia Cristina da Silva Sales	2
+ PDF Chat	Tackling the Covid-19 Pandemic: The Bangladesh Perspective	2020	Taimur Islam Anup Kumar Talukder Md. Nurealam Siddiqui Tofazzal Islam	2
+ PDF Chat	A disparity in the number of studies related to COVID-19 and SARS-CoV-2 between low- and middle-income countries and high-income countries	2020	Takuma Usuzaki Shuji Chiba Minoru Shimoyama Mami Ishikuro Taku Obara	2
+ PDF Chat	Real-time, interactive website for US-county-level COVID-19 event risk assessment	2020	Aroon T. Chande Seolha Lee Mallory Harris Quan Nguyen Stephen J. Beckett Troy Hilley Clio Andris Joshua S. Weitz	2
+ PDF Chat	Epidemiology and transmission dynamics of COVID-19 in two Indian states	2020	Ramanan Laxminarayan Brian Wahl ShankarReddy Dudala Kathiresan Gopal Chandra Mohan B S. Neelima K. S. Jawahar Reddy Jayachandran Radhakrishnan Joseph A. Lewnard	2
+ PDF Chat	Challenges of Testing COVID-19 Cases in Bangladesh	2020	Khan Rubayet Rahaman Md. Sultan Mahmud Bishawjit Mallick	2
+	COVID-19 Transmission due to Mass Mobility Before and After the Largest Festival in Bangladesh: An Epidemiologic Study	2021	Farah Naz Rahman Aminur Rahman Anthony Obinna Iwuagwu Koustuv Dalal	2
+	Migration, externalities, and the diffusion of COVID-19 in South Asia☆	2020	Jean N. Lee Mahreen Mahmud Jonathan Morduch Saravana Ravindran Abu Shonchoy	2