Samantha Lycett

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All published works

Action	Title	Year	Authors
+ PDF Chat	Using sequence data to study spatial scales of interactions driving spread of Highly Pathogenic Avian Influenza in Great Britain	2024	Anna Gamża Samantha Lycett A. Sanchez Rowland R. Kao
+	Evaluation of risk-based travel policy for the COVID-19 epidemic in Scotland: a population-based surveillance study	2024	I. McLachlan Selene Huntley Kirstin Leslie Jennifer L. Bishop C. Redman Gonzalo Yebra Sharif Shaaban Nicolaos Christofidis Samantha Lycett Matthew T. G. Holden
+ PDF Chat	Infector characteristics exposed by spatial analysis of SARS-CoV-2 sequence and demographic data analysed at fine geographical scales	2024	Anna Gamża Samantha Lycett Will Harvey Joseph Hughes Sema Nickbakhsh David L Robertson Alison Smith Palmer Anthony Wood Rowland R. Kao
+ PDF Chat	Temporal Dynamics, Discovery, and Emergence of Human-Transmissible RNA Viruses	2024	Lu Lu Feifei Zhang Liam Brierley Gail Robertson Margo Chase-Topping Samantha Lycett Mark Woolhouse
+ PDF Chat	Evaluating public health effects of risk-based travel policy for the COVID-19 epidemic in Scotland	2023	I. McLachlan Selene Huntley Kirstin Leslie Jennifer L. Bishop C. Redman Gonzalo Yebra Sharif Shaaban Nicolaos Christofidis Samantha Lycett Matthew T. G. Holden
+ PDF Chat	Genesis and spread of multiple reassortants during the 2016/2017 H5 avian influenza epidemic in Eurasia	2020	Samantha Lycett Anne Pohlmann Christoph Staubach Valentina Caliendo Mark Woolhouse Martin Beer Thijs Kuiken Samantha Lycett Anne Pohlmann Christoph Staubach
+ PDF Chat	Broadwick: a framework for computational epidemiology	2016	Anthony O’Hare Samantha Lycett T. Doherty Liliana C. M. Salvador Rowland R. Kao
+ PDF Chat	Reassortment between Influenza B Lineages and the Emergence of a Coadapted PB1–PB2–HA Gene Complex	2014	Gytis Dudas Trevor Bedford Samantha Lycett Andrew Rambaut
+	Reassortment between influenza B lineages and the emergence of a co-adapted PB1-PB2-HA gene complex	2014	Gytis Dudas Trevor Bedford Samantha Lycett Andrew Rambaut
+	Reassortment between influenza B lineages and the emergence of a co-adapted PB1-PB2-HA gene complex	2014	Gytis Dudas Trevor Bedford Samantha Lycett Andrew Rambaut
+ PDF Chat	Real-time characterization of the molecular epidemiology of an influenza pandemic	2013	Jessica Hedge Samantha Lycett Andrew Rambaut
+	Origin and fate of A/H1N1 influenza in Scotland during 2009	2012	Samantha Lycett Nigel J. McLeish Christopher Robertson William F. Carman Gregory J. Baillie James McMenamin Andrew Rambaut Peter Simmonds Mark Woolhouse Andrew Brown

Common Coauthors

Coauthor	Papers Together
Andrew Rambaut	5
Mark Woolhouse	3
Joseph Hughes	3
Rowland R. Kao	3
Gytis Dudas	3
Trevor Bedford	3
Sema Nickbakhsh	3
David L. Robertson	2
Sharif Shaaban	2
Selene Huntley	2
Alison Smith‐Palmer	2
C. Redman	2
I. McLachlan	2
Gonzalo Yebra	2
Anna Gamża	2
Nicolaos Christofidis	2
Matthew T. G. Holden	2
Kirstin Leslie	2
Jennifer L. Bishop	2
Sophie von Dobschuetz	1
François‐Xavier Briand	1
Isabella Monne	1
Anthony O’Hare	1
Marius Gilbert	1
Chang‐Seon Song	1
Oliver G. Pybus	1
Edyta Świętoń	1
Thijs Kuiken	1
Peter Simmonds	1
Ian H. Brown	1
Sarah C. Hill	1
Liliana C. M. Salvador	1
Andrew C. Breed	1
Anne Pohlmann	1
Anthony Wood	1
Siamak Zohari	1
Hon S. Ip	1
David E. Swayne	1
Mahmoud M. Naguib	1
Gregory J. Baillie	1
Vladimir Savić	1
Thomas J. DeLiberto	1
Lu Lu	1
Dong‐Hun Lee	1
Feifei Zhang	1
Christopher Robertson	1
Andrew Brown	1
Gail Robertson	1
Xiu‐Feng Wan	1
David L Robertson	1

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+	Effectiveness of travel restrictions in the rapid containment of human influenza: a systematic review	2014	Ana Mateus Harmony Otete Charles Beck Gayle P. Dolan Jonathan S. Nguyen‐Van‐Tam	2
+ PDF Chat	Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics	2008	Vladimir N. Minin Erik Bloomquist Marc A. Suchard	2
+	Evidence of the effectiveness of travel-related measures during the early phase of the COVID-19 pandemic: a rapid systematic review	2021	Karen A. Grépin Tsi Lok Ho Zhihan Liu Summer Marion Julianne Piper Catherine Z Worsnop Kelley Lee	2
+ PDF Chat	An integrative review of the limited evidence on international travel bans as an emerging infectious disease disaster control measure	2020	Nicole A. Errett Lauren Sauer Lainie Rutkow	2
+ PDF Chat	Effectiveness of airport screening at detecting travellers infected with novel coronavirus (2019-nCoV)	2020	Billy J. Quilty Sam Clifford Stefan Flasche Rosalind M. Eggo	2
+	Estimated effectiveness of symptom and risk screening to prevent the spread of COVID-19	2020	Katelyn M. Gostic Ana C. R. Gomez Riley O. Mummah Adam J. Kucharski James O. Lloyd‐Smith	2
+	Public health effects of travel-related policies on the COVID-19 pandemic: A mixed-methods systematic review	2021	Lama Bou-Karroum Joanne Khabsa Mathilda Jabbour Nadeen Hilal Zeinab Haidar Pamela Abi Khalil Rima A. Abdul-Khalek Jana Assaf Gladys Honein‐AbouHaidar Clara Abou Samra	2
+	Prudent public health intervention strategies to control the coronavirus disease 2019 transmission in India	2020	Sandip Mandal Tarun Bhatnagar Nimalan Arinaminpathy Anup Agarwal Amartya Chowdhury Manoj Murhekar RamanR Gangakhedkar Swarup Sarkar	2
+ PDF Chat	Context-specific emergence and growth of the SARS-CoV-2 Delta variant	2022	John T. McCrone Verity Hill Sumali Bajaj Rosario Evans Pena Ben Lambert Rhys P. D. Inward Samir Bhatt Erik Volz Christopher Ruis Simon Dellicour	2
+	Travel-related control measures to contain the COVID-19 pandemic: a rapid review	2020	Jacob Burns Ani Movsisyan Jan M Stratil Michaela Coenen Karl Emmert-Fees Karin Geffert Sabine Hoffmann Olaf Horstick Michael Laxy Lisa M. Pfadenhauer	2
+ PDF Chat	Dynamical Patterns of Cattle Trade Movements	2011	Paolo Bajardi Alain Barrat Fabrizio Natale Lara Savini Vittoria Colizza	1
+ PDF Chat	Methods to infer transmission risk factors in complex outbreak data	2011	Simon Cauchemez Neil M. Ferguson	1
+ PDF Chat	Sero-Prevalence and Incidence of A/H1N1 2009 Influenza Infection in Scotland in Winter 2009–2010	2011	Nigel J. McLeish Peter Simmonds Chris Robertson Ian Handel Mark McGilchrist Brajendra K. Singh Shona M. Kerr Margo Chase-Topping Katy Sinka Mark Bronsvoort	1
+ PDF Chat	Household Transmission of 2009 Pandemic Influenza A (H1N1) Virus in the United States	2009	Simon Cauchemez Christl A. Donnelly Carrie Reed Azra C. Ghani Christophe Fraser Charlotte Kent Lyn Finelli Neil M. Ferguson	1
+ PDF Chat	How generation intervals shape the relationship between growth rates and reproductive numbers	2006	Jacco Wallinga Marc Lipsitch	1
+	Synchrony, Waves, and Spatial Hierarchies in the Spread of Influenza	2006	Cécile Viboud Ottar N. Bjørnstad David L. Smith Lone Simonsen Mark A. Miller Bryan T. Grenfell	1
+ PDF Chat	Empirical Evidence for the Effect of Airline Travel on Inter-Regional Influenza Spread in the United States	2006	John S. Brownstein Cecily J. Wolfe Kenneth D. Mandl	1
+	Spatial dynamics of the 1918 influenza pandemic in England, Wales and the United States	2010	Rosalind M. Eggo Simon Cauchemez Neil M. Ferguson	1
+ PDF Chat	Estimated epidemiologic parameters and morbidity associated with pandemic H1N1 influenza	2009	Ashleigh R. Tuite Amy L. Greer Maria Whelan A.-L. Winter B. Lee Ping Yan Jian Wu Seyed M. Moghadas David L. Buckeridge Babak Pourbohloul	1
+ PDF Chat	Pandemic Potential of a Strain of Influenza A (H1N1): Early Findings	2009	Christophe Fraser Christl A. Donnelly Simon Cauchemez William P. Hanage Maria D. Van Kerkhove T. Déirdre Hollingsworth Jamie T. Griffin Rebecca F. Baggaley Helen E. Jenkins Emily J. Lyons	1
+	Integrating influenza antigenic dynamics with molecular evolution	2014	Trevor Bedford Marc A. Suchard Philippe Lemey Gytis Dudas Victoria Gregory Alan Hay John W. McCauley Colin A. Russell Derek J. Smith Andrew Rambaut	1
+ PDF Chat	Inferring pandemic growth rates from sequence data	2012	Eric de Silva Neil M. Ferguson Christophe Fraser	1
+	Epidemiological report of pandemic (H1N1) 2009 in the UK, April 2009 - May 2010.	2010	Estelle McLean Richard Pebody	1
+ PDF Chat	Highly Pathogenic Avian Influenza Virus (H5N8) Clade 2.3.4.4 Infection in Migratory Birds, Egypt	2017	Abdulhafez Selim Ahmed M. Erfan Naglaa M. Hagag Ali Zanaty Abdelhafez Samir Mohamed Samy Ahmed Mohammed Abdel-Satar Arafa Mohamed A. Soliman Momtaz Shaheen	1
+ PDF Chat	Pandemics: spend on surveillance, not prediction	2018	Edward C. Holmes Andrew Rambaut Kristian G. Andersen	1
+	Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020	2020	Emma B. Hodcroft Moira Zuber Sarah Nadeau Timothy G. Vaughan Katharine H. D. Crawford Christian L. Althaus Martina L. Reichmuth John E. Bowen Alexandra C. Walls Davide Corti	1
+ PDF Chat	Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland	2020	Ana da Silva Filipe James G. Shepherd Thomas Williams Joseph Hughes Elihú Aranday-Cortés Patawee Asamaphan Shirin Ashraf Carlos E. Balcazar Kirstyn Brunker Alasdair Campbell	1
+ PDF Chat	Ranking the risk of animal-to-human spillover for newly discovered viruses	2021	Zoë Grange Tracey Goldstein Christine K. Johnson Simon J. Anthony Kirsten Gilardi Peter Daszak Kevin J. Olival Tammie O’Rourke Suzan Murray Sarah H. Olson	1
+	Spread of a SARS-CoV-2 variant through Europe in the summer of 2020	2021	Emma B. Hodcroft Moira Zuber Sarah Nadeau Timothy G. Vaughan Katharine H. D. Crawford Christian L. Althaus Martina L. Reichmuth John E. Bowen Alexandra C. Walls Davide Corti	1
+	Identification of novel bat coronaviruses sheds light on the evolutionary origins of SARS-CoV-2 and related viruses	2021	Hong Zhou Jingkai Ji Xing Chen Yuhai Bi Juan Li Qihui Wang Tao Hu Hao Song Runchu Zhao Yanhua Chen	1
+ PDF Chat	The science of the host–virus network	2021	Gregory F. Albery Daniel J. Becker Liam Brierley Cara E. Brook Rebecca C. Christofferson Lily E. Cohen Tad Dallas Evan A. Eskew Anna C. Fagre Maxwell J. Farrell	1
+ PDF Chat	Mathematical models of infectious disease transmission	2008	Nicholas C. Grassly Christophe Fraser	1
+ PDF Chat	2009 pandemic influenza A(H1N1) virus in Scotland: geographically variable immunity in Spring 2010, following the winter outbreak	2010	Walt E. Adamson S Maddi Christopher Robertson Susan McDonagh P.J. Molyneaux Kate Templeton William F. Carman	1
+ PDF Chat	Inference for Nonlinear Epidemiological Models Using Genealogies and Time Series	2011	David A. Rasmussen Oliver Ratmann Katia Koelle	1
+	Large-Scale Spatial-Transmission Models of Infectious Disease	2007	Steven Riley	1
+	Estimation of the reproductive number and the serial interval in early phase of the 2009 influenza A/H1N1 pandemic in the USA	2009	Laura F. White Jacco Wallinga Lyn Finelli Carrie Reed Steven Riley Marc Lipsitch Michele Pagano	1
+ PDF Chat	Coalescent inference for infectious disease: meta-analysis of hepatitis C	2013	Bethany L. Dearlove Daniel J. Wilson	1
+ PDF Chat	Fixed-Parameter Algorithms for Maximum Agreement Forests	2013	Chris Whidden Robert G. Beiko Norbert Zeh	1
+ PDF Chat	The role of the airline transportation network in the prediction and predictability of global epidemics	2006	Vittoria Colizza Alain Barrat Marc Barthélemy Alessandro Vespignani	1
+ PDF Chat	Strategies for mitigating an influenza pandemic	2006	Neil M. Ferguson Derek A. T. Cummings Christophe Fraser James Cajka Philip C. Cooley Donald S. Burke	1
+	Spatial heterogeneity, nonlinear dynamics and chaos in infectious diseases	1995	Bryan T. Grenfell A. Kleczkowski C. A. Gilligan BM Bolker	1
+ PDF Chat	Air Travel and the Spread of Influenza: Important Caveats	2006	Cécile Viboud Mark A. Miller Bryan T. Grenfell Ottar N. Bjørnstad Lone Simonsen	1