Joshua I. Levy

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All published works

Action	Title	Year	Authors
+	Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics	2023	Nathaniel L. Matteson Gabriel W. Hassler Ezra Kurzban Madison A. Schwab Sarah A. Perkins Karthik Gangavarapu Joshua I. Levy Edyth Parker David T. Pride Abbas Hakim
+ PDF Chat	Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics	2023	Nathaniel L. Matteson Gabriel W. Hassler Ezra Kurzban Madison A. Schwab Sarah A. Perkins Karthik Gangavarapu Joshua I. Levy Edyth Parker David T. Pride Abbas Hakim
+ PDF Chat	The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic	2022	Michael Worobey Joshua I. Levy Lorena M. Malpica Serrano Alexander Crits‐Christoph Jonathan E. Pekar Stephen A. Goldstein Angela L. Rasmussen Moritz U. G. Kraemer Chris Newman Marion Koopmans
+ PDF Chat	The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2	2022	Jonathan E. Pekar Andrew F. Magee Edyth Parker Niema Moshiri Katherine Izhikevich Jennifer L. Havens Karthik Gangavarapu Lorena M. Malpica Serrano Alexander Crits‐Christoph Nathaniel L. Matteson
+ PDF Chat	Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations	2022	Laura D. Hughes Karthik Gangavarapu Alaa Abdel Latif Julia L. Mullen Manar Alkuzweny Emory Hufbauer Ginger Tsueng Emily Haag Mark Zeller Christine M. Aceves

Common Coauthors

Coauthor	Papers Together
Marc A. Suchard	5
Kristian G. Andersen	5
Nathaniel L. Matteson	4
Mark Zeller	4
Joel O. Wertheim	4
Karthik Gangavarapu	4
Michael Worobey	4
Edyth Parker	3
Emory Hufbauer	3
Christine M. Aceves	3
Niema Moshiri	3
Elijah S. Lawrence	2
Anelizze Castro-Martínez	2
Robert T. Schooley	2
Rebecca Fielding‐Miller	2
Natasha K. Martin	2
Stephen F. Kingsmore	2
Gabriel W. Hassler	2
Elizabeth W. Smoot	2
Sarah A. Perkins	2
Benjamin Henson	2
Abraham García-Gil	2
José Manuel Cornejo‐Bravo	2
Elizabeth H. Simmons	2
Oscar E. Zazueta	2
Alicia Vera	2
John D. Malone	2
Madison A. Schwab	2
Jocelyn Olivas Flores	2
Ezra Kurzban	2
Beatriz Olivares-Flores	2
Smruthi Karthikeyan	2
Kristen Jepsen	2
Agustin J. Negrete	2
Emily Spencer	2
Ashley Plascencia	2
Robert F. Garry	2
Nicole L. Washington	2
Nathan A. Baer	2
Marco A. Luna-Ruiz Esparza	2
Tom Barber	2
Andrea Rivera	2
Omid Bakhtar	2
Cassandra Wauer	2
Lorena M. Malpica Serrano	2
Sharon L. Reed	2
Rob Knight	2
Ronald W. McLawhon	2
Manuel Sanchez‐Alavez	2
Daniel McDonald	2

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+ PDF Chat	The effect of travel restrictions on the spread of the 2019 novel coronavirus (COVID-19) outbreak	2020	Matteo Chinazzi Jessica T. Davis Marco Ajelli Corrado Gioannini Maria Litvinova Stefano Merler Ana Pastore y Piontti Kunpeng Mu Luca Rossi Kaiyuan Sun	3
+ PDF Chat	Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK	2021	Louis du Plessis John T. McCrone Alexander E. Zarebski Verity Hill Christopher Ruis Bernardo Gutiérrez Jayna Raghwani Jordan Ashworth Rachel Colquhoun Thomas R. Connor	3
+ PDF Chat	The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2	2022	Jonathan E. Pekar Andrew F. Magee Edyth Parker Niema Moshiri Katherine Izhikevich Jennifer L. Havens Karthik Gangavarapu Lorena M. Malpica Serrano Alexander Crits‐Christoph Nathaniel L. Matteson	3
+ PDF Chat	The emergence of SARS-CoV-2 in Europe and North America	2020	Michael Worobey Jonathan E. Pekar Brendan B. Larsen Martha I. Nelson Verity Hill Jeffrey B. Joy Andrew Rambaut Marc A. Suchard Joel O. Wertheim Philippe Lemey	3
+	Emergence of an early SARS-CoV-2 epidemic in the United States	2021	Mark Zeller Karthik Gangavarapu Catelyn Anderson Allison R. Smither John A. Vanchiere Rebecca Rose Daniel J. Snyder Gytis Dudas Alexander Watts Nathaniel L. Matteson	3
+ PDF Chat	GISAID’s Role in Pandemic Response	2021	Shruti Khare Céline Gurry Lucas Freitas Mark B. Schultz Gunter Bach Amadou Diallo Nancy Akite Joses Ho Raphael Tc Lee Winston Yeo	3
+ PDF Chat	Interventions to mitigate early spread of SARS-CoV-2 in Singapore: a modelling study	2020	Joel Ruihan Koo Alex R. Cook Minah Park Yinxiaohe Sun Haoyang Sun Jue Tao Lim Clarence C. Tam Borame Sue Lee Dickens	2
+ PDF Chat	Effect of Predeparture Testing on Postarrival SARS-CoV-2–Positive Test Results Among International Travelers — CDC Traveler-Based Genomic Surveillance Program, Four U.S. Airports, March–September 2022	2023	Stephen M. Bart Teresa Smith Sarah Anne J. Guagliardo Allison Taylor Walker Benjamin H. Rome Siyao Lisa Li Thomas W. S. Aichele Robert C. Stein Ezra T. Ernst Robert C. Morfino	2
+	New strategies to improve minimap2 alignment accuracy	2021	Heng Li	2
+ PDF Chat	Variation in the COVID-19 infection–fatality ratio by age, time, and geography during the pre-vaccine era: a systematic analysis	2022		2
+ PDF Chat	Analyzing the impact of a real-life outbreak simulator on pandemic mitigation: An epidemiological modeling study	2022	Ivan Specht Kian Sani Bryn C. Loftness Curtis Hoffman Gabrielle Gionet Amy Bronson John Marshall Craig Decker Landen Bailey Tomi Siyanbade	2
+ PDF Chat	Global Expansion of SARS-CoV-2 Variants of Concern: Dispersal Patterns and Influence of Air Travel	2022	Houriiyah Tegally Eduan Wilkinson Darren P. Martin Monika Moir Anderson F. Brito Marta Giovanetti Kamran Khan Carmen Huber Isaac I. Bogoch James Emmanuel San	2
+ PDF Chat	Minimap2: pairwise alignment for nucleotide sequences	2018	Heng Li	2
+ PDF Chat	Living in a pandemic: changes in mobility routines, social activity and adherence to COVID-19 protective measures	2021	Lorenzo Lucchini Simone Centellegher Luca Pappalardo Riccardo Gallotti Filippo Privitera Bruno Lepri Marco De Nadai	2
+	The origins of SARS-CoV-2: A critical review	2021	Edward C. Holmes Stephen A. Goldstein Angela L. Rasmussen David L. Robertson Alexander Crits‐Christoph Joel O. Wertheim Simon J. Anthony William Barclay Maciej F. Boni Peter C. Doherty	2
+ PDF Chat	The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic	2022	Michael Worobey Joshua I. Levy Lorena M. Malpica Serrano Alexander Crits‐Christoph Jonathan E. Pekar Stephen A. Goldstein Angela L. Rasmussen Moritz U. G. Kraemer Chris Newman Marion Koopmans	2
+	Spread of a SARS-CoV-2 variant through Europe in the summer of 2020	2021	Emma B. Hodcroft Moira Zuber Sarah Nadeau Timothy G. Vaughan Katharine H. D. Crawford Christian L. Althaus Martina L. Reichmuth John E. Bowen Alexandra C. Walls Davide Corti	2
+	Lockdowns result in changes in human mobility which may impact the epidemiologic dynamics of SARS-CoV-2	2021	Nishant Kishore Rebecca Kahn Pamela P. Martinez Pablo M. De Salazar Ayesha S. Mahmud Caroline O. Buckee	2
+ PDF Chat	Efficient Behavior of Small-World Networks	2001	Vito Latora Massimo Marchiori	2
+	Quantifying COVID-19 importation risk in a dynamic network of domestic cities and international countries	2021	Xiaoyi Han Yilan Xu Linlin Fan Yi Huang Minhong Xu Song Gao	2
+ PDF Chat	Dissecting the early COVID-19 cases in Wuhan	2021	Michael Worobey	2
+ PDF Chat	Unexposed populations and potential COVID-19 hospitalisations and deaths in European countries as per data up to 21 November 2021	2022	Lloyd A. C. Chapman Rosanna C. Barnard Timothy Russell Sam Abbott Kevin van Zandvoort Nicholas G. Davies Adam J. Kucharski	2
+ PDF Chat	Serosurvey for SARS-CoV-2 among blood donors in Wuhan, China from September to December 2019	2022	Le Chang Lei Zhao Yan Xiao Tingting Xu Lan Chen Yan Cai Xiaojing Dong Conghui Wang Xia Xiao Lili Ren	2
+	Genomic epidemiology of the first two waves of SARS-CoV-2 in Canada	2022	Angela McLaughlin Vincent Montoya Rachel L. Miller Gideon Mordecai Michael Worobey Art F. Y. Poon Jeffrey B. Joy	2
+ PDF Chat	Context-specific emergence and growth of the SARS-CoV-2 Delta variant	2022	John T. McCrone Verity Hill Sumali Bajaj Rosario Evans Pena Ben Lambert Rhys P. D. Inward Samir Bhatt Erik Volz Christopher Ruis Simon Dellicour	2
+ PDF Chat	Shifts in global mobility dictate the synchrony of SARS-CoV-2 epidemic waves	2022	Houriiyah Tegally Kamran Khan Carmen Huber Túlio de Oliveira Moritz U. G. Kraemer	2
+ PDF Chat	Human mobility in response to COVID-19 in France, Italy and UK	2021	Alessandro Galeazzi Matteo Cinelli Giovanni Bonaccorsi Francesco Pierri Ana Lucía Schmidt Antonio Scala Fabio Pammolli Walter Quattrociocchi	2
+ PDF Chat	Evaluating the Adequacy of Gravity Models as a Description of Human Mobility for Epidemic Modelling	2012	James E. Truscott Neil M. Ferguson	2
+ PDF Chat	Strong Social Distancing Measures In The United States Reduced The COVID-19 Growth Rate	2020	Charles Courtemanche Joseph Garuccio Anh N. Le Joshua C. Pinkston Aaron Yelowitz	2
+ PDF Chat	Mobility network models of COVID-19 explain inequities and inform reopening	2020	Serina Chang Emma Pierson Pang Wei Koh Jaline Gerardin Beth Redbird David B. Grusky Jure Leskovec	2
+	Household transmission of SARS-CoV-2 and risk factors for susceptibility and infectivity in Wuhan: a retrospective observational study	2021	Fang Li Yuan-Yuan Li Ming-Jin Liu Li-Qun Fang Natalie E. Dean Gary Wong Xiao-Bing Yang Ira M. Longini M. Elizabeth Halloran Huai-Ji Wang	2
+	Changes in local travel behaviour before and during the COVID-19 pandemic in Hong Kong	2021	Nan Zhang Wei Jia Peihua Wang Chung-Hin Dung Pengcheng Zhao Kathy Leung Boni Su Reynold Cheng Yuguo Li	2
+ PDF Chat	Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2	2014	Philippe Lemey Andrew Rambaut Trevor Bedford Nuno R. Faria Filip Bielejec Guy Baele Colin A. Russell Derek J. Smith Oliver G. Pybus Dirk Brockmann	2
+ PDF Chat	Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe	2020	Seth Flaxman Swapnil Mishra Axel Gandy H. Juliette T. Unwin Thomas A. Mellan Helen Coupland Charles Whittaker Harrison Zhu Tresnia Berah Jeffrey W. Eaton	2
+	Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia	2020	Qun Li Xuhua Guan Peng Wu Xiaoye Wang Lei Zhou Yeqing Tong Ruiqi Ren Kathy Leung Eric H. Y. Lau Jessica Y. Wong	2
+	Timing the SARS-CoV-2 index case in Hubei province	2021	Jonathan E. Pekar Michael Worobey Niema Moshiri Konrad Scheffler Joel O. Wertheim	2
+ PDF Chat	Spatiotemporal spread pattern of the COVID-19 cases in China	2020	Yongjiu Feng Qingmei Li Xiaohua Tong Rong Wang Shuting Zhai Chen Gao Zhenkun Lei Shurui Chen Yilun Zhou Jiafeng Wang	2
+ PDF Chat	A global database of COVID-19 vaccinations	2021	Edouard Mathieu Hannah Ritchie Esteban Ortiz-Ospina Max Roser Joe Hasell Cameron Appel Charlie Giattino Lucas Rodés-Guirao	2
+ PDF Chat	Using a real-world network to model localized COVID-19 control strategies	2020	Josh A. Firth Joel Hellewell Petra Klepac Stephen M. Kissler Mark Jit Katherine E. Atkins Samuel Clifford Christian Julián Villabona‐Arenas Sophie Meakin Charlie Diamond	2
+ PDF Chat	Temporal signal and the phylodynamic threshold of SARS-CoV-2	2020	Sebastián Duchêne Leo Featherstone Melina Haritopoulou-Sinanidou Andrew Rambaut Philippe Lemey Guy Baele	2
+ PDF Chat	A global panel database of pandemic policies (Oxford COVID-19 Government Response Tracker)	2021	Thomas Hale Noam Angrist Rafael Goldszmidt Beatriz Kira Anna Petherick Toby Phillips Samuel Webster Emily Cameron-Blake Laura Hallas Saptarshi Majumdar	2
+	Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence	2021	Moritz U. G. Kraemer Verity Hill Christopher Ruis Simon Dellicour Sumali Bajaj John T. McCrone Guy Baele Kris V. Parag Anya Lindström Battle Bernardo Gutiérrez	2
+ PDF Chat	Should international borders re-open? The impact of travel restrictions on COVID-19 importation risk	2021	Jessica Liebig Kamran Najeebullah Raja Jurdak Ahmad El Shoghri Dean Paini	2
+	State-level tracking of COVID-19 in the United States	2020	H. Juliette T. Unwin Swapnil Mishra Valerie C. Bradley Axel Gandy Thomas A. Mellan Helen Coupland Jonathan Ish-Horowicz Michaela Vollmer Charles Whittaker Sarah Filippi	1
+ PDF Chat	Pandemics: spend on surveillance, not prediction	2018	Edward C. Holmes Andrew Rambaut Kristian G. Andersen	1
+	Challenges in control of COVID-19: short doubling time and long delay to effect of interventions	2021	Lorenzo Pellis Francesca Scarabel Helena B. Stage Christopher E. Overton Lauren H. K. Chappell Elizabeth Fearon Emma Bennett Katrina Lythgoe Thomas House Ian Hall	1
+ PDF Chat	High Contagiousness and Rapid Spread of Severe Acute Respiratory Syndrome Coronavirus 2	2020	Steven Sanche Yen Ting Lin Chonggang Xu Ethan Romero-Severson Nicolas Hengartner Ruian Ke	1
+ PDF Chat	A universal model for mobility and migration patterns	2012	Filippo Simini Marta C. González Amos Maritan Albert‐László Barabási	1
+	Estimates of the severity of coronavirus disease 2019: a model-based analysis	2020	Robert Verity Lucy Okell Ilaria Dorigatti Peter Winskill Charles Whittaker Natsuko Imai Gina Cuomo-Dannenburg Hayley Thompson Patrick Walker Han Fu	1
+	The effect of human mobility and control measures on the COVID-19 epidemic in China	2020	Moritz U. G. Kraemer Chia-Hung Yang Bernardo Gutiérrez Chieh‐Hsi Wu Brennan Klein David M. Pigott Louis du Plessis Nuno R. Faria Ruoran Li William P. Hanage	1