Toby Dylan Hocking

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All published works

Action	Title	Year	Authors
+ PDF Chat	SOAK: Same/Other/All K-fold cross-validation for estimating similarity of patterns in data subsets	2024	Toby Dylan Hocking Guillaume Thibault Cameron S. Bodine Paul Nelson Arellano Alan Shenkin Olivia Jasmine Lindly
+ PDF Chat	Finite Sample Complexity Analysis of Binary Segmentation	2024	Toby Dylan Hocking
+ PDF Chat	Efficient line search for optimizing Area Under the ROC Curve in gradient descent	2024	Jadon Fowler Toby Dylan Hocking
+ PDF Chat	Enhancing Changepoint Detection: Penalty Learning through Deep Learning Techniques	2024	Tung Lam Nguyen Toby Dylan Hocking
+ PDF Chat	Functional Labeled Optimal Partitioning	2024	Jacob M. Kaufman Alyssa J. Stenberg Toby Dylan Hocking
+ PDF Chat	Open-source approach for reproducible substrate mapping using semantic segmentation on recreation-grade side scan sonar datasets	2023	Cameron S. Bodine Daniel Buscombe Toby Dylan Hocking
+ PDF Chat	Reply to: Beyond microbial carbon use efficiency	2023	Feng Tao Johannes Lehmann Ying‐Ping Wang Lifen Jiang Bernhard Ahrens Kostiantyn Viatkin Stefano Manzoni Benjamin Z. Houlton Yuanyuan Huang Bruce A. Hungate
+ PDF Chat	<b>gfpop</b>: An <i>R</i> Package for Univariate Graph-Constrained Change-Point Detection	2023	Vincent Runge Toby Dylan Hocking Gaetano Romano Fatemeh Afghah Paul Fearnhead Guillem Rigaill
+	A Log-linear Gradient Descent Algorithm for Unbalanced Binary Classification using the All Pairs Squared Hinge Loss	2023	Kyle R. Rust Toby Dylan Hocking
+	Cross-Validation for Training and Testing Co-occurrence Network Inference Algorithms	2023	Daniel Agyapong Jeffrey Propster Jane C. Marks Toby Dylan Hocking
+ PDF Chat	Labeled optimal partitioning	2022	Toby Dylan Hocking Anuraag Srivastava
+ PDF Chat	Survival Regression with Accelerated Failure Time Model in XGBoost	2022	Avinash Barnwal Hyunsu Cho Toby Dylan Hocking
+ PDF Chat	Generalized Functional Pruning Optimal Partitioning (GFPOP) for Constrained Changepoint Detection in Genomic Data	2022	Toby Dylan Hocking Guillem Rigaill Paul Fearnhead Guillaume Bourque
+ PDF Chat	SPARSEMODr: Rapidly simulate spatially explicit and stochastic models of COVID-19 and other infectious diseases	2022	Joseph R. Mihaljevic Seth Borkovec Saikanth Ratnavale Toby Dylan Hocking Kelsey E Banister Joseph E Eppinger Crystal M. Hepp Eck Doerry
+	Functional Labeled Optimal Partitioning	2022	Toby Dylan Hocking Jacob M. Kaufman Alyssa J. Stenberg
+	Linear Time Dynamic Programming for Computing Breakpoints in the Regularization Path of Models Selected From a Finite Set	2021	Joseph Vargovich Toby Dylan Hocking
+ PDF Chat	<tt>SPARSEMODr</tt>: Rapid simulations of spatially explicit and stochastic models infectious diseases, including COVID-19	2021	Joseph R. Mihaljevic Seth Borkovec Saikanth Ratnavale Toby Dylan Hocking Kelsey E Banister Joseph E Eppinger Crystal M. Hepp Eck Doerry
+	A Graph-Constrained Changepoint Learning Approach for Automatic QRS-Complex Detection	2021	Atiyeh Fotoohinasab Toby Dylan Hocking Fatemeh Afghah
+	Chatbots language design: the influence of language variation on user experience.	2021	Ana Paula Chaves Jesse Egbert Toby Dylan Hocking Eck Doerry Marco Aurélio Gerosa
+	Increased Peak Detection Accuracy in Over-dispersed ChiP-seq Data With Supervised Segmentation Models	2021	Arnaud Liehrmann Guillem Rigaill Toby Dylan Hocking
+	A greedy graph search algorithm based on changepoint analysis for automatic QRS complex detection	2021	Atiyeh Fotoohinasab Toby Dylan Hocking Fatemeh Afghah
+	Optimizing ROC Curves with a Sort-Based Surrogate Loss Function for Binary Classification and Changepoint Detection	2021	Jonathan A. Hillman Toby Dylan Hocking
+	A Graph-Constrained Changepoint Learning Approach for Automatic QRS-Complex Detection	2021	Atiyeh Fotoohinasab Toby Dylan Hocking Fatemeh Afghah
+	Chatbots language design: the influence of language variation on user experience	2021	Ana Paula Cunha Chaves Jesse Egbert Toby Dylan Hocking Eck Doerry Marco Aurélio Gerosa
+ PDF Chat	A Graph-Constrained Changepoint Learning Approach for Automatic QRS-Complex Detection	2020	Atiyeh Fotoohinasab Toby Dylan Hocking Fatemeh Afghah
+	A Graph-constrained Changepoint Detection Approach for ECG Segmentation	2020	Atiyeh Fotoohinasab Toby Dylan Hocking Fatemeh Afghah
+	A Graph-constrained Changepoint Detection Approach for ECG Segmentation	2020	Atiyeh Fotoohinasab Toby Dylan Hocking Fatemeh Afghah
+	Linear time dynamic programming for the exact path of optimal models selected from a finite set	2020	Toby Dylan Hocking Joseph Vargovich
+	A Graph-constrained Changepoint Detection Approach for ECG Segmentation	2020	Atiyeh Fotoohinasab Toby Dylan Hocking Fatemeh Afghah
+	Labeled Optimal Partitioning	2020	Toby Dylan Hocking Anuraag Srivastava
+	Increased peak detection accuracy in over-dispersed ChIP-seq data with supervised segmentation models	2020	Arnaud Liehrmann Guillem Rigaill Toby Dylan Hocking
+	gfpop: an R Package for Univariate Graph-Constrained Change-Point Detection	2020	Vincent Runge Toby Dylan Hocking Gaetano Romano Fatemeh Afghah Paul Fearnhead Guillem Rigaill
+	Survival regression with accelerated failure time model in XGBoost	2020	Avinash Barnwal Hyunsu Cho Toby Dylan Hocking
+	Fast nonconvex deconvolution of calcium imaging data	2018	Sean Jewell Toby Dylan Hocking Paul Fearnhead Daniela Witten
+	Fast Nonconvex Deconvolution of Calcium Imaging Data	2018	Sean Jewell Toby Dylan Hocking Paul Fearnhead Daniela Witten
+	Generalized Functional Pruning Optimal Partitioning (GFPOP) for Constrained Changepoint Detection in Genomic Data	2018	Toby Dylan Hocking Guillem Rigaill Paul Fearnhead Guillaume Bourque
+	Fast Nonconvex Deconvolution of Calcium Imaging Data	2018	Sean Jewell Toby Dylan Hocking Paul Fearnhead Daniela Witten
+	Maximum Margin Interval Trees	2017	Alexandre Drouin Toby Dylan Hocking François Laviolette
+	A log-linear time algorithm for constrained changepoint detection	2017	Toby Dylan Hocking Guillem Rigaill Paul Fearnhead Guillaume Bourque
+	Maximum Margin Interval Trees	2017	Alexandre Drouin Toby Dylan Hocking François Laviolette
+	A breakpoint detection error function for segmentation model selection and evaluation	2015	Toby Dylan Hocking
+	A breakpoint detection error function for segmentation model selection and evaluation	2015	Toby Dylan Hocking
+	PeakSegJoint: fast supervised peak detection via joint segmentation of multiple count data samples	2015	Toby Dylan Hocking Guillaume Bourque
+	On Optimal Multiple Changepoint Algorithms for Large Data	2014	Robert Maidstone Toby Dylan Hocking Guillem Rigaill Paul Fearnhead
+	Support vector comparison machines	2014	David Venuto Toby Dylan Hocking Lakjaree Sphanurattana Masashi Sugiyama
+	Visual annotations and a supervised learning approach for evaluating and calibrating ChIP-seq peak detectors	2014	Toby Dylan Hocking Patricia Goerner-Potvin Andréanne Morin Xiaojian Shao Guillaume Bourque
+	Support vector comparison machines	2014	Toby Dylan Hocking Supaporn Spanurattana Masashi Sugiyama
+	On Optimal Multiple Changepoint Algorithms for Large Data	2014	Robert Maidstone Toby Dylan Hocking Guillem Rigaill Paul Fearnhead
+ PDF Chat	Clusterpath An Algorithm for Clustering using Convex Fusion Penalties	2011	Toby Dylan Hocking Armand Joulin Francis Bach Jean‐Philippe Vert

Common Coauthors

Coauthor	Papers Together
Paul Fearnhead	10
Fatemeh Afghah	9
Atiyeh Fotoohinasab	7
Guillaume Bourque	5
Guillem Rigaill	5
Guillem Rigaill	4
Eck Doerry	4
Sean Jewell	3
Daniela Witten	3
Robert Maidstone	2
Joseph Vargovich	2
Marco Aurélio Gerosa	2
Saikanth Ratnavale	2
Joseph E Eppinger	2
Joseph R. Mihaljevic	2
Anuraag Srivastava	2
Vincent Runge	2
Alexandre Drouin	2
Hyunsu Cho	2
Jesse Egbert	2
Alyssa J. Stenberg	2
Arnaud Liehrmann	2
Cameron S. Bodine	2
Seth Borkovec	2
François Laviolette	2
Jacob M. Kaufman	2
Avinash Barnwal	2
Masashi Sugiyama	2
Kelsey E Banister	2
Crystal M. Hepp	2
Yusuf Yiğini	1
Alan Shenkin	1
Rosa Cuevas-Corona	1
Armand Joulin	1
Kyle R. Rust	1
Nuno Carvalhais	1
Francis Bach	1
Rodrigo Vargas	1
Xiaomeng Huang	1
Daniel Buscombe	1
Andréanne Morin	1
Daniel Agyapong	1
Kostiantyn Viatkin	1
Luciano Di Paolo	1
Ying‐Ping Wang	1
Tung Lam Nguyen	1
Michael W. Schmidt	1
Ashish A. Malik	1
David Venuto	1
Jean‐Philippe Vert	1

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+	A log-linear time algorithm for constrained changepoint detection	2017	Toby Dylan Hocking Guillem Rigaill Paul Fearnhead Guillaume Bourque	9
+ PDF Chat	Optimal Detection of Changepoints With a Linear Computational Cost	2012	Rebecca Killick Paul Fearnhead Idris A. Eckley	8
+ PDF Chat	An algorithm for optimal partitioning of data on an interval	2005	Brad Jackson J. D. Scargle D. C. Barnes Sundararajan Arabhi Albrecht Alt P. Gioumousis E. Gwin P. San Lei Tan Tun Tao Tsai	8
+	A Cluster Analysis Method for Grouping Means in the Analysis of Variance	1974	A.J. Scott M. Knott	7
+ PDF Chat	Single-modal and multi-modal false arrhythmia alarm reduction using attention-based convolutional and recurrent neural networks	2020	Sajad Mousavi Atiyeh Fotoohinasab Fatemeh Afghah	5
+ PDF Chat	Estimating the Dimension of a Model	1978	Gideon Schwarz	4
+	A Graph-constrained Changepoint Detection Approach for ECG Segmentation	2020	Atiyeh Fotoohinasab Toby Dylan Hocking Fatemeh Afghah	4
+	A pruned dynamic programming algorithm to recover the best segmentations with 1 to K_max change-points.	2015	Guillem Rigaill	4
+ PDF Chat	Generalized Functional Pruning Optimal Partitioning (GFPOP) for Constrained Changepoint Detection in Genomic Data	2022	Toby Dylan Hocking Guillem Rigaill Paul Fearnhead Guillaume Bourque	4
+	Inter- and Intra- Patient ECG Heartbeat Classification for Arrhythmia Detection: A Sequence to Sequence Deep Learning Approach	2019	Sajad Mousavi Fatemeh Afghah	4
+	Regression Shrinkage and Selection Via the Lasso	1996	Robert Tibshirani	4
+	Estimating the number of change-points via Schwarz' criterion	1988	Yi‐Ching Yao	3
+ PDF Chat	Selective review of offline change point detection methods	2019	Charles Truong Laurent Oudre Nicolas Vayatis	3
+	Wild binary segmentation for multiple change-point detection	2014	Piotr Fryźlewicz	3
+ PDF Chat	Using penalized contrasts for the change-point problem	2005	Marc Lavielle	3
+ PDF Chat	Segmentor3IsBack: an R package for the fast and exact segmentation of Seq-data	2014	Alice Cleynen Michel Koskas Émilie Lebarbier Guillem Rigaill Stéphane Robin	3
+	Spread and dynamics of the COVID-19 epidemic in Italy: Effects of emergency containment measures	2020	Marino Gatto Enrico Bertuzzo Lorenzo Mari Stefano Miccoli Luca Carraro Renato Casagrandi Andrea Rinaldo	2
+ PDF Chat	Nearly unbiased variable selection under minimax concave penalty	2010	Cun‐Hui Zhang	2
+ PDF Chat	Harnessing multiple models for outbreak management	2020	Katriona Shea Michael C. Runge David J. Pannell William J. M. Probert Shou‐Li Li Michael J. Tildesley Matthew J. Ferrari	2
+	How will country-based mitigation measures influence the course of the COVID-19 epidemic?	2020	Roy M. Anderson Hans Heesterbeek Don Klinkenberg T. Déirdre Hollingsworth	2
+	Isotone Optimization in<i>R</i>: Pool-Adjacent-Violators Algorithm (PAVA) and Active Set Methods	2009	Jan de Leeuw Kurt Hornik Patrick Mair	2
+ PDF Chat	<b>gfpop</b>: An <i>R</i> Package for Univariate Graph-Constrained Change-Point Detection	2023	Vincent Runge Toby Dylan Hocking Gaetano Romano Fatemeh Afghah Paul Fearnhead Guillem Rigaill	2
+ PDF Chat	An investigation of transmission control measures during the first 50 days of the COVID-19 epidemic in China	2020	Huaiyu Tian Youngjoon Hong Yidan Li Chieh‐Hsi Wu Бин Чэн Moritz U. G. Kraemer Bingying Li Jun Cai Bo Xu Qiqi Yang	2
+	A Graph-constrained Changepoint Detection Approach for ECG Segmentation	2020	Atiyeh Fotoohinasab Toby Dylan Hocking Fatemeh Afghah	2
+	Large-Scale Spatial-Transmission Models of Infectious Disease	2007	Steven Riley	2
+	Diseases in Metapopulations	2009	Julien Arino	2
+	Active set algorithms for isotonic regression; A unifying framework	1990	Michael J. Best Nilotpal Chakravarti	2
+ PDF Chat	Multiscale Change Point Inference	2014	Klaus Frick Axel Munk Hannes Sieling	2
+ PDF Chat	<i>SparseNet</i>: Coordinate Descent With Nonconvex Penalties	2011	Rahul Mazumder Jerome H. Friedman Trevor Hastie	2
+	Association of Public Health Interventions With the Epidemiology of the COVID-19 Outbreak in Wuhan, China	2020	An Pan Li Liu Chaolong Wang Huan Guo Xingjie Hao Qi Wang Jiao Huang Na He Hongjie Yu Xihong Lin	2
+	Utilizing general human movement models to predict the spread of emerging infectious diseases in resource poor settings	2019	Moritz U. G. Kraemer Nick Golding Donal Bisanzio Samir Bhatt David M. Pigott Sarah E Ray Oliver J. Brady John S. Brownstein Nuno R. Faria Derek A. T. Cummings	2
+	Efficient penalty search for multiple changepoint problems	2014	Kaylea Haynes Idris A. Eckley Paul Fearnhead	2
+	A path algorithm for the Fused Lasso Signal Approximator	2009	Hölger Hoefling	2
+ PDF Chat	Changepoint Detection in the Presence of Outliers	2017	Paul Fearnhead Guillem Rigaill	2
+	Six challenges in modelling for public health policy	2014	C. Jessica E. Metcalf W. John Edmunds Justin Lessler	2
+ PDF Chat	Penalty learning for changepoint detection	2017	Charles Truong Laurent Gudre Nicolas Vayatis	2
+	A pruned dynamic programming algorithm to recover the best segmentations with $1$ to $K_{max}$ change-points	2010	Guillem Rigaill	2
+ PDF Chat	Detecting multiple change-points in the mean of Gaussian process by model selection	2004	Émilie Lebarbier	2
+	Matching pursuits with time-frequency dictionaries	1993	Stéphane Mallat Zhifeng Zhang	2
+	SparseStep: Approximating the Counting Norm for Sparse Regularization	2017	Gerrit J. J. van den Burg Patrick J. F. Groenen Andreas Alfons	2
+ PDF Chat	A Vaccination Model for a Multi-City System	2012	Menachem Lachiany Lewi Stone	2
+	A primer on stochastic epidemic models: Formulation, numerical simulation, and analysis	2017	Linda J. S. Allen	2
+	Low-rank matrix completion using nuclear norm minimization and facial reduction	2017	Shimeng Huang Henry Wolkowicz	2
+ PDF Chat	Spatial epidemiology of networked metapopulation: an overview	2014	Lin Wang Xiang Li	2
+ PDF Chat	Performance evaluation of DNA copy number segmentation methods	2014	Morgane Pierre‐Jean Guillem Rigaill Pierre Neuvial	2
+ PDF Chat	Rural–urban gradient in seasonal forcing of measles transmission in Niger	2010	Matthew J. Ferrari Ali Djibo Rebecca F. Grais Nita Bharti Bryan T. Grenfell Ottar N. Bjørnstad	2
+	Data-driven calibration of penalties for least-squares regression	2008	Sylvain Arlot Pascal Massart	2
+	Superspreading and the effect of individual variation on disease emergence	2005	James O. Lloyd‐Smith Sebastian J. Schreiber Peter Ekkehard Kopp Wayne M. Getz	2
+	Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties	2001	Jianqing Fan Runze Li	2
+ PDF Chat	Segmentation of the Poisson and negative binomial rate models: a penalized estimator	2014	Alice Cleynen Émilie Lebarbier	2