Eugene V. Koonin

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All published works

Action	Title	Year	Authors
+	Universal Patterns of Delayed Vaccination Impact on COVID-19 Mortality: USA Versus Europe	2024	O. V. Matveeva Dmitry Kobak Alexey Ogurtsov Svetlana A. Shabalina Eugene V. Koonin
+ PDF Chat	Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer	2023	Dillon S. McBride Sofya K. Garushyants John Franks Andrew F. Magee Steven H. Overend Devra Huey Amanda M. Williams Seth A. Faith Ahmed Kandeil Sanja Trifkovic
+	Thermodynamics of evolution and the origin of life	2022	Vitaly Vanchurin Yuri I. Wolf Eugene V. Koonin M. I. Katsnelson
+	Toward a theory of evolution as multilevel learning	2022	Vitaly Vanchurin Yuri I. Wolf M. I. Katsnelson Eugene V. Koonin
+ PDF Chat	Towards a Theory of Evolution as Multilevel Learning	2021	Vitaly Vanchurin Yuri I. Wolf M. I. Katsnelson Eugene V. Koonin
+	Thermodynamics of Evolution and the Origin of Life	2021	Vitaly Vanchurin Yuri I. Wolf Eugene V. Koonin M. I. Katsnelson
+	Towards a Theory of Evolution as Multilevel Learning	2021	Vitaly Vanchurin Yuri I. Wolf M. I. Katsnelson Eugene V. Koonin
+ PDF Chat	Substantial impact of post-vaccination contacts on cumulative infections during viral epidemics	2021	Nash D. Rochman Yuri I. Wolf Eugene V. Koonin
+ PDF Chat	Evolution of human respiratory virus epidemics	2021	Nash D. Rochman Yuri I. Wolf Eugene V. Koonin
+	Alternating active-dormitive strategy enables overtaking by disadvantaged prey through Parrondo's paradox	2021	Tao Wen Eugene V. Koonin Kang Hao Cheong
+	Supplementary Data for Ongoing Global and Regional Adaptive Evolution of SARS-CoV-2	2021	Nash D. Rochman Yuri I. Wolf Guilhem Faure Pascal Mutz Feng Zhang Eugene V. Koonin
+	Supplementary Data for Ongoing Global and Regional Adaptive Evolution of SARS-CoV-2	2021	Nash D. Rochman Yuri I. Wolf Guilhem Faure Pascal Mutz Feng Zhang Eugene V. Koonin
+ PDF Chat	Evolution of human respiratory virus epidemics	2021	Nash D. Rochman Yuri I. Wolf Eugene V. Koonin
+ PDF Chat	Substantial impact of post-vaccination contacts on cumulative infections during viral epidemics	2021	Nash D. Rochman Yuri I. Wolf Eugene V. Koonin
+	Thermodynamics of Evolution and the Origin of Life	2021	Vitaly Vanchurin Yuri I. Wolf Eugene V. Koonin M. I. Katsnelson
+	Towards a Theory of Evolution as Multilevel Learning	2021	Vitaly Vanchurin Yuri I. Wolf M. I. Katsnelson Eugene V. Koonin
+	Alternating active-dormitive strategy enables overtaking by disadvantaged prey through Parrondo's paradox	2021	Tao Wen Eugene V. Koonin Kang Hao Cheong
+ PDF Chat	Substantial Impact of Post Vaccination Contacts on Cumulative Infections during Viral Epidemics	2020	Nash D. Rochman Yuri I. Wolf Eugene V. Koonin
+ PDF Chat	Mutation–selection balance and compensatory mechanisms in tumour evolution	2020	Erez Persi Yuri I. Wolf D. Horn Eytan Ruppin Francesca Demichelis Robert A. Gatenby Robert J. Gillies Eugene V. Koonin
+ PDF Chat	Prediction of the incubation period for COVID-19 and future virus disease outbreaks	2020	Ayal B. Gussow Noam Auslander Yuri I. Wolf Eugene V. Koonin
+ PDF Chat	Evolution of Human Respiratory Virus Epidemics	2020	Nash D. Rochman Yuri I. Wolf Eugene V. Koonin
+ PDF Chat	Ongoing Global and Regional Adaptive Evolution of SARS-CoV-2	2020	Nash D. Rochman Yuri I. Wolf Guilhem Faure Pascal Mutz Feng Zhang Eugene V. Koonin
+ PDF Chat	Punctuated equilibrium as the default mode of evolution of large populations on fitness landscapes dominated by saddle points in the weak-mutation limit	2020	Yuri Bakhtin M. I. Katsnelson Yuri I. Wolf Eugene V. Koonin
+ PDF Chat	Can Environmental Manipulation Help Suppress Cancer? Non‐Linear Competition Among Tumor Cells in Periodically Changing Conditions	2020	S. G. Babajanyan Eugene V. Koonin Kang Hao Cheong
+	Prediction of the virus incubation period for COVID-19 and future outbreaks	2020	Ayal B. Gussow Noam Auslander Yuri I. Wolf Eugene V. Koonin
+	The sounds of science—a symphony for many instruments and voices	2020	Gerianne M. Alexander Roland E. Allen Anthony Atala Warwick P. Bowen A. A. Coley John B. Goodenough M. I. Katsnelson Eugene V. Koonin Mario Krenn Lars S. Madsen
+	Punctuated equilibrium as the default mode of evolution of large populations on fitness landscapes dominated by saddle points in the weak-mutation limit	2020	Yuri Bakhtin M. I. Katsnelson Yuri I. Wolf Eugene V. Koonin
+	Additional file 3 of Prediction of the incubation period for COVID-19 and future virus disease outbreaks	2020	Ayal B. Gussow Noam Auslander Yuri I. Wolf Eugene V. Koonin
+	Additional file 2 of Prediction of the incubation period for COVID-19 and future virus disease outbreaks	2020	Ayal B. Gussow Noam Auslander Yuri I. Wolf Eugene V. Koonin
+ PDF Chat	On the feasibility of saltational evolution	2019	M. I. Katsnelson Yuri I. Wolf Eugene V. Koonin
+ PDF Chat	Criticality in tumor evolution and clinical outcome	2018	Erez Persi Yuri I. Wolf Mark D.M. Leiserson Eugene V. Koonin Eytan Ruppin
+ PDF Chat	Physical foundations of biological complexity	2018	Yuri I. Wolf M. I. Katsnelson Eugene V. Koonin
+ PDF Chat	On the feasibility of saltational evolution	2018	M. I. Katsnelson Yuri I. Wolf Eugene V. Koonin
+	On the feasibility of saltational evolution	2018	M. I. Katsnelson Yuri I. Wolf Eugene V. Koonin
+ PDF Chat	Criticality in Tumor Evolution and Clinical Outcome	2018	Erez Persi Yuri I. Wolf Mark D.M. Leiserson Eugene V. Koonin Eytan Ruppin
+	Physical foundations of biological complexity	2018	Yuri I. Wolf M. I. Katsnelson Eugene V. Koonin
+ PDF Chat	Physical foundations of biological complexity	2018	Yuri I. Wolf M. I. Katsnelson Eugene V. Koonin
+ PDF Chat	Towards physical principles of biological evolution	2018	M. I. Katsnelson Yuri I. Wolf Eugene V. Koonin
+	On the feasibility of saltational evolution	2018	M. I. Katsnelson Yuri I. Wolf Eugene V. Koonin
+	Towards physical principles of biological evolution	2017	M. I. Katsnelson Yuri I. Wolf Eugene V. Koonin
+ PDF Chat	Universal Pacemaker of Genome Evolution	2012	Sagi Snir Yuri I. Wolf Eugene V. Koonin
+ PDF Chat	Predictability of Evolutionary Trajectories in Fitness Landscapes	2011	Alexander E. Lobkovsky Yuri I. Wolf Eugene V. Koonin
+ PDF Chat	Are There Laws of Genome Evolution?	2011	Eugene V. Koonin
+ PDF Chat	Exceptional error minimization in putative primordial genetic codes	2009	Artem S. Novozhilov Eugene V. Koonin
+	Exceptional error minimization in putative primordial genetic codes	2009	Artem S. Novozhilov Eugene V. Koonin
+	Origin and evolution of the genetic code: The universal enigma	2008	Eugene V. Koonin Artem S. Novozhilov
+	Origin and evolution of the genetic code: The universal enigma	2008	Eugene V. Koonin Artem S. Novozhilov
+	The cosmological model of eternal inflation and the transition from chance to biological evolution in the history of life: The possibility of chance emergence of the replication and translation systems, and the protein superfolds	2007	Eugene V. Koonin
+ PDF Chat	Biological applications of the theory of birth-and-death processes	2006	Artem S. Novozhilov Georgy P. Karev Eugene V. Koonin
+	Mathematical modeling of tumor therapy with oncolytic viruses: Effects of parametric heterogeneity on cell dynamics	2006	Georgy P. Karev Artem S. Novozhilov Eugene V. Koonin
+ PDF Chat	Modeling genome evolution with a diffusion approximation of a birth-and-death process	2005	Georgy P. Karev Faina Berezovskaya Eugene V. Koonin
+	Mathematical modeling of anti-tumor virus therapy: Regimes with complete recovery within the framework of deterministic models	2005	Artem S. Novozhilov Faina Berezovskaya Eugene V. Koonin Georgy P. Karev
+	Mathematical modeling of evolution of horizontally transferred genes	2005	Artem S. Novozhilov Georgy P. Karev Eugene V. Koonin
+	Biological applications of the theory of birth-and-death processes	2005	Artem S. Novozhilov Georgy P. Karev Eugene V. Koonin
+	Modeling genome evolution with a diffusion approximation of a birth-and-death process	2005	Georgy P. Karev Faina Berezovskaya Eugene V. Koonin
+	Simple stochastic birth and death models of genome evolution: Was there enough time for us to evolve?	2005	Georgy P. Karev Yuri I. Wolf Eugene V. Koonin
+ PDF Chat	Simple stochastic birth and death models of genome evolution: was there enough time for us to evolve?	2003	Georgy P. Karev Yuri I. Wolf Eugene V. Koonin

Common Coauthors

Coauthor	Papers Together
Yuri I. Wolf	38
M. I. Katsnelson	19
Georgy P. Karev	9
Artem S. Novozhilov	9
Nash D. Rochman	9
Vitaly Vanchurin	7
Ayal B. Gussow	4
Noam Auslander	4
Eytan Ruppin	3
Guilhem Faure	3
Kang Hao Cheong	3
Faina Berezovskaya	3
Erez Persi	3
Pascal Mutz	3
Feng Zhang	2
Mark D.M. Leiserson	2
Yuri Bakhtin	2
Tao Wen	2
Julianna B. Lenoch	1
Steven H. Overend	1
Andrew J. Montoney	1
Robert A. Gatenby	1
L. E. Reichl	1
Michael J. Tonkovich	1
Philippe Lemey	1
Seth A. Faith	1
Marc A. Suchard	1
A. A. Coley	1
Nicolas P. Mauranyapin	1
Art I Melvin	1
Dmitry Kobak	1
Anthony Atala	1
Trushar Jeevan	1
Alexey Ogurtsov	1
Sarah N. Bevins	1
Ahmed Kandeil	1
Lance A. Miller	1
Roman V. Yampolskiy	1
Andrew F. Magee	1
Sagi Snir	1
Sofya K. Garushyants	1
S. G. Babajanyan	1
Svetlana A. Shabalina	1
Francesca Demichelis	1
Dillon S. McBride	1
J. Tyler Genders	1
Robert J. Gillies	1
Warwick P. Bowen	1
John B. Goodenough	1
Thomas J. DeLiberto	1

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+ PDF Chat	Towards physical principles of biological evolution	2018	M. I. Katsnelson Yuri I. Wolf Eugene V. Koonin	11
+ PDF Chat	Physical foundations of biological complexity	2018	Yuri I. Wolf M. I. Katsnelson Eugene V. Koonin	7
+ PDF Chat	Impact of deleterious passenger mutations on cancer progression	2013	Christopher D. McFarland Kirill S. Korolev Gregory V. Kryukov Shamil Sunyaev Leonid A. Mirny	7
+	Collective evolution and the genetic code	2006	Kalin Vetsigian Carl R. Woese Nigel Goldenfeld	6
+ PDF Chat	Accumulation of driver and passenger mutations during tumor progression	2010	Ivana Božić Tibor Antal Hisashi Ohtsuki Hannah Carter Dewey Kim Sining Chen Rachel Karchin Kenneth W. Kinzler Bert Vogelstein Martin A. Nowak	5
+ PDF Chat	The World as a Neural Network	2020	Vitaly Vanchurin	5
+ PDF Chat	Tug-of-war between driver and passenger mutations in cancer and other adaptive processes	2014	Christopher D. McFarland Leonid A. Mirny Kirill S. Korolev	5
+ PDF Chat	Stripe Glasses: Self-Generated Randomness in a Uniformly Frustrated System	2000	Jörg Schmalian Peter G. Wolynes	4
+ PDF Chat	Continuous-time Markov chains: an applications-oriented approach	1992	William J. Anderson	4
+	Avalanches and<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:mfrac><mml:mrow><mml:mn>1</mml:mn></mml:mrow><mml:mrow><mml:mi>f</mml:mi></mml:mrow></mml:mfrac></mml:math>Noise in Evolution and Growth Models	1994	Sergei Maslov Maya Paczuski Per Bak	4
+ PDF Chat	Simple stochastic birth and death models of genome evolution: was there enough time for us to evolve?	2003	Georgy P. Karev Yuri I. Wolf Eugene V. Koonin	4
+ PDF Chat	Ongoing Global and Regional Adaptive Evolution of SARS-CoV-2	2020	Nash D. Rochman Yuri I. Wolf Guilhem Faure Pascal Mutz Feng Zhang Eugene V. Koonin	4
+	Ultrametricity for physicists	1986	R. Rammal G. Toulouse M. A. Virasoro	4
+	Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus	2020	Bette Korber Will Fischer S. Gnanakaran Hyejin Yoon James Theiler W. P. Abfalterer Nicolas Hengartner Elena E. Giorgi Tanmoy Bhattacharya Brian Foley	4
+ PDF Chat	Evolution of Human Respiratory Virus Epidemics	2020	Nash D. Rochman Yuri I. Wolf Eugene V. Koonin	4
+ PDF Chat	Mathematical models of vaccination	2002	Almut Scherer Angela R. McLean	4
+ PDF Chat	Structural Glass Transition and the Entropy of the Metastable States	1995	Rémi Monasson	4
+ PDF Chat	Self-Induced Glassiness and Pattern Formation in Spin Systems Subject to Long-Range Interactions	2016	Alessandro Principi M. I. Katsnelson	4
+	The Clonal Evolution of Tumor Cell Populations	1976	Peter C. Nowell̀	4
+ PDF Chat	Evolution of human respiratory virus epidemics	2021	Nash D. Rochman Yuri I. Wolf Eugene V. Koonin	4
+ PDF Chat	Evolution of biological complexity	2000	Christoph Adami Charles Ofria Travis C. Collier	4
+ PDF Chat	On the feasibility of saltational evolution	2019	M. I. Katsnelson Yuri I. Wolf Eugene V. Koonin	4
+ PDF Chat	Stripe glasses in ferromagnetic thin films	2016	Alessandro Principi M. I. Katsnelson	4
+ PDF Chat	Punctuated evolution for the quasispecies model	2003	Joachim Krug Christian K. Karl	3
+ PDF Chat	The triplet genetic code had a doublet predecessor	2004	Apoorva Patel	3
+ PDF Chat	Biology's next revolution	2007	Nigel Goldenfeld Carl R. Woese	3
+ PDF Chat	Many-body physics with ultracold gases	2008	Immanuel Bloch Jean Dalibard W. Zwerger	3
+ PDF Chat	Immune life history, vaccination, and the dynamics of SARS-CoV-2 over the next 5 years	2020	Chadi M. Saad-Roy Caroline E. Wagner Rachel E. Baker Sinead E. Morris Jeremy Farrar Andrea L. Graham Simon A. Levin Michael J. Mina C. Jessica E. Metcalf Bryan T. Grenfell	3
+	On the evolutionary epidemiology of SARS-CoV-2	2020	Troy Day Sylvain Gandon Sébastien Lion Sarah P. Otto	3
+	Some simple epidemic models	2006	Fred Brauer	3
+ PDF Chat	Age-structure and transient dynamics in epidemiological systems	2019	F. M. G. Magpantay Aaron A. King Pejman Rohani	3
+ PDF Chat	Evolutionary trajectories in rugged fitness landscapes	2005	Kavita Jain Joachim Krug	3
+ PDF Chat	Epidemiology and transmission of COVID-19 in 391 cases and 1286 of their close contacts in Shenzhen, China: a retrospective cohort study	2020	Qifang Bi Yongsheng Wu Shujiang Mei Chenfei Ye Xuan Zou Zhen Zhang Xiaojian Liu Lan Wei Shaun Truelove Tong Zhang	3
+ PDF Chat	The large-scale organization of metabolic networks	2000	Hawoong Jeong B. Tombor Réka Albert Zoltán N. Oltvai Albert‐László Barabási	3
+ PDF Chat	Spatial evolutionary epidemiology of spreading epidemics	2016	Sébastien Lion Sylvain Gandon	3
+ PDF Chat	Classifying the evolutionary and ecological features of neoplasms	2017	Carlo C. Maley Athena Aktipis Trevor A. Graham Andrea Sottoriva Amy M. Boddy Michalina Janiszewska Ariosto S. Silva Marco Gerlinger Yinyin Yuan Kenneth J. Pienta	3
+	Transmission Dynamics and Control of Severe Acute Respiratory Syndrome	2003	Marc Lipsitch Ted Cohen Ben S. Cooper James M. Robins Stefan Ma Lyn James Gowri Gopalakrishna Suok Kai Chew Chorh Chuan Tan Matthew H. Samore	3
+ PDF Chat	The exaptive excellence of spandrels as a term and prototype	1997	Stephen Jay Gould	3
+ PDF Chat	Vaccination models and optimal control strategies to dengue	2013	Helena Sofia Rodrigues M. Teresa T. Monteiro Delfim F. M. Torres	3
+ PDF Chat	Cancer Evolution: Mathematical Models and Computational Inference	2014	Niko Beerenwinkel Roland F. Schwarz Moritz Gerstung Florian Markowetz	3
+ PDF Chat	Life History Trade-Offs in Tumors	2018	Amy M. Boddy Weini Huang Athena Aktipis	3
+ PDF Chat	Life is Physics: Evolution as a Collective Phenomenon Far From Equilibrium	2011	Nigel Goldenfeld Carl R. Woese	3
+	Viral Shedding and Clinical Illness in Naturally Acquired Influenza Virus Infections	2010	Lincoln Lau Benjamin J. Cowling Vicky J. Fang Kwok‐Hung Chan Eric H. Y. Lau Marc Lipsitch C. Cheng Peter M. Houck Timothy M. Uyeki Malik Peiris	3
+ PDF Chat	Lethality and centrality in protein networks	2001	Hawoong Jeong S. P. Mason Albert‐László Barabási Zoltán N. Oltvai	3
+ PDF Chat	Translocation Properties of Primitive Molecular Machines and Their Relevance to the Structure of the Genetic Code	2002	Maximino Aldana-González G. Cocho Hernán Larralde Gustavo Martínez‐Mekler	3
+	The MATLAB ODE Suite	1997	L. F. Shampine Mark W. Reichelt	3
+ PDF Chat	Simple models for containment of a pandemic	2006	Julien Arino Fred Brauer P. van den Driessche James Watmough Jian Wu	3
+	Stochastic Processes and Population Growth	1977	David G. Kendall	3
+	The construction of next-generation matrices for compartmental epidemic models	2009	Odo Diekmann Hans Heesterbeek Michael C. Roberts	3
+	Vaccination based control of infections in SIRS models with reinfection: special reference to pertussis	2012	Muntaser Safan Mirjam Kretzschmar K. P. Hadeler	3