Rui Wang

Follow

Generating author description...

All published works
Action Title Year Authors
+ PDF Chat Is Segment Anything Model 2 All You Need for Surgery Video Segmentation? A Systematic Evaluation 2024 Cheng Yuan
Ji-an Jiang
Kailin Yang
Wu Lv
Rui Wang
Zi Meng
Haodi Ping
Ziyu Xu
Yifan Zhou
Wanli Song
+ PDF Chat A Comprehensive Survey of Dynamic Graph Neural Networks: Models, Frameworks, Benchmarks, Experiments and Challenges 2024 ZhengZhao Feng
Rui Wang
TianXing Wang
Mingli Song
Sai Wu
Shuibing He
+ Combinatorial and Hodge Laplacians: Similarities and Differences 2024 Emily Ribando-Gros
Rui Wang
Jiahui Chen
Yiying Tong
Guo‐Wei Wei
+ PDF Chat ChatGPT in Drug Discovery: A Case Study on Anticocaine Addiction Drug Development with Chatbots 2023 Rui Wang
Hongsong Feng
Guo‐Wei Wei
+ PLPCA: Persistent Laplacian-Enhanced PCA for Microarray Data Analysis 2023 Sean Cottrell
Rui Wang
Guo‐Wei Wei
+ PDF Chat Multiobjective Molecular Optimization for Opioid Use Disorder Treatment Using Generative Network Complex 2023 Hongsong Feng
Rui Wang
Chang‐Guo Zhan
Guo‐Wei Wei
+ PDF Chat Emerging Dominant SARS-CoV-2 Variants 2022 Jiahui Chen
Rui Wang
Yuta Hozumi
Gengzhuo Liu
Yuchi Qiu
Xiaoqi Wei
Guo‐Wei Wei
+ PDF Chat Persistent Laplacian projected Omicron BA.4 and BA.5 to become new dominating variants 2022 Jiahui Chen
Yuchi Qiu
Rui Wang
Guo‐Wei Wei
+ Persistent path Laplacian 2022 Rui Wang
Guo‐Wei Wei
+ PDF Chat Persistent Homology for Effective Non-Prehensile Manipulation 2022 Ewerton R. Vieira
Daniel Nakhimovich
Kai Gao
Rui Wang
Jingjin Yu
Kostas E. Bekris
+ Methodology-Centered Review of Molecular Modeling, Simulation, and Prediction of SARS-CoV-2 2022 Kaifu Gao
Rui Wang
Jiahui Chen
Limei Cheng
Jaclyn Frishcosy
Yuta Huzumi
Yuchi Qiu
Tom Schluckbier
Xiaoqi Wei
Guo‐Wei Wei
+ Combinatorial and Hodge Laplacians: Similarity and Difference 2022 Emily Ribando-Gros
Rui Wang
Jiahui Chen
Yiying Tong
Guo‐Wei Wei
+ Persistent Laplacian projected Omicron BA.4 and BA.5 to become new dominating variants 2022 Jiahui Chen
Yuchi Qiu
Rui Wang
Guo‐Wei Wei
+ Persistent Homology for Effective Non-Prehensile Manipulation 2022 Ewerton R. Vieira
Daniel Nakhimovich
Kai Gao
Rui Wang
Jingjin Yu
Kostas E. Bekris
+ CCP: Correlated Clustering and Projection for Dimensionality Reduction 2022 Yuta Hozumi
Rui Wang
Guo‐Wei Wei
+ Persistent Path Laplacian 2022 Rui Wang
Guo‐Wei Wei
+ PDF Chat Omicron (B.1.1.529): Infectivity, vaccine breakthrough, and antibody resistance. 2021 Jiahui Chen
Rui Wang
Nancy Benovich Gilby
Guo‐Wei Wei
+ PDF Chat Omicron (B.1.1.529): Infectivity, vaccine breakthrough, and antibody resistance 2021 Jiahui Chen
Rui Wang
Nancy Benovich Gilby
Guo‐Wei Wei
+ The evolution of the mechanisms of SARS-CoV-2 evolution revealing vaccine-resistant mutations in Europe and America. 2021 Rui Wang
Jiahui Chen
Guo‐Wei Wei
+ Emerging vaccine-breakthrough SARS-CoV-2 variants. 2021 Rui Wang
Jiahui Chen
Yuta Hozumi
Changchuan Yin
Guo‐Wei Wei
+ UMAP-assisted K-means clustering of large-scale SARS-CoV-2 mutation datasets 2021 Yuta Hozumi
Rui Wang
Changchuan Yin
Guo-Wei Wei
+ Vaccine-escape and fast-growing mutations in the United Kingdom, the United States, Singapore, Spain, South Africa, and other COVID-19-devastated countries 2021 Rui Wang
Jiahui Chen
Kaifu Gao
Guo‐Wei Wei
+ PDF Chat HERMES: Persistent spectral graph software 2021 Rui Wang
Rundong Zhao
Emily Ribando-Gros
Jiahui Chen
Yiying Tong
Guo‐Wei Wei
+ Prediction and mitigation of mutation threats to COVID-19 vaccines and antibody therapies 2021 Jiahui Chen
Kaifu Gao
Rui Wang
Guo‐Wei Wei
+ Review of the mechanisms of SARS-CoV-2 evolution and transmission 2021 Jiahui Chen
Rui Wang
Guo‐Wei Wei
+ Emerging vaccine-breakthrough SARS-CoV-2 variants 2021 Rui Wang
Jiahui Chen
Yuta Hozumi
Changchuan Yin
Guo‐Wei Wei
+ The evolution of the mechanisms of SARS-CoV-2 evolution revealing vaccine-resistant mutations in Europe and America 2021 Rui Wang
Jiahui Chen
Guo‐Wei Wei
+ Omicron (B.1.1.529): Infectivity, vaccine breakthrough, and antibody resistance 2021 Jiahui Chen
Rui Wang
Nancy Benovich Gilby
Guo‐Wei Wei
+ Methodology-centered review of molecular modeling, simulation, and prediction of SARS-CoV-2 2021 Kaifu Gao
Rui Wang
Jiahui Chen
Limei Cheng
Jaclyn Frishcosy
Yuta Huzumi
Yuchi Qiu
Tom Schluckbier
Guo‐Wei Wei
+ Decoding Asymptomatic COVID-19 Infection and Transmission 2020 Rui Wang
Jiahui Chen
Yuta Hozumi
Changchuan Yin
Guo‐Wei Wei
+ Review of COVID-19 Antibody Therapies 2020 Jiahui Chen
Kaifu Gao
Rui Wang
Duc Duy Nguyen
Guo‐Wei Wei
+ PDF Chat Host Immune Response Driving SARS-CoV-2 Evolution 2020 Rui Wang
Yuta Hozumi
Yong‐Hui Zheng
Changchuan Yin
Guo‐Wei Wei
+ Mutations on COVID-19 diagnostic targets 2020 Rui Wang
Yuta Hozumi
Changchuan Yin
Guo-Wei Wei
+ Characterizing SARS-CoV-2 mutations in the United States 2020 Rui Wang
Jiahui Chen
Kaifu Gao
Yuta Hozumi
Changchuan Yin
Guo‐Wei Wei
+ Mutations Strengthened SARS-CoV-2 Infectivity 2020 Jiahui Chen
Rui Wang
Menglun Wang
Guo-Wei Wei
+ PDF Chat Repositioning of 8565 Existing Drugs for COVID-19 2020 Kaifu Gao
Duc Duy Nguyen
Jiahui Chen
Rui Wang
Guo‐Wei Wei
+ Persistent spectral graph 2020 Rui Wang
Duc Duy Nguyen
Guo‐Wei Wei
+ Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia 2020 Qun Li
Xuhua Guan
Peng Wu
Xiaoye Wang
Lei Zhou
Yeqing Tong
Ruiqi Ren
Kathy Leung
Eric H. Y. Lau
Jessica Y. Wong
+ Decoding SARS-CoV-2 transmission, evolution and ramification on COVID-19 diagnosis, vaccine, and medicine 2020 Rui Wang
Yuta Hozumi
Changchuan Yin
Guo‐Wei Wei
+ Mutations on COVID-19 diagnostic targets 2020 Rui Wang
Yuta Hozumi
Changchuan Yin
Guo‐Wei Wei
+ Repositioning of 8565 existing drugs for COVID-19 2020 Kaifu Gao
Duc Duy Nguyen
Jiahui Chen
Rui Wang
Guo‐Wei Wei
+ Mutations strengthened SARS-CoV-2 infectivity 2020 Jiahui Chen
Rui Wang
Menglun Wang
Guo‐Wei Wei
+ Review of COVID-19 Antibody Therapies 2020 Jiahui Chen
Kaifu Gao
Rui Wang
Duc Duy Nguyen
Guo‐Wei Wei
+ Decoding asymptomatic COVID-19 infection and transmission 2020 Rui Wang
Yuta Hozumi
Changchuan Yin
Guo‐Wei Wei
+ Characterizing SARS-CoV-2 mutations in the United States 2020 Rui Wang
Jiahui Chen
Kaifu Gao
Yuta Hozumi
Changchuan Yin
Guo‐Wei Wei
+ Host immune response driving SARS-CoV-2 evolution 2020 Rui Wang
Yuta Hozumi
Yong‐Hui Zheng
Changchuan Yin
Guo‐Wei Wei
+ Prediction and mitigation of mutation threats to COVID-19 vaccines and antibody therapies 2020 Jiahui Chen
Kaifu Gao
Rui Wang
Guo‐Wei Wei
+ HERMES: Persistent spectral graph software 2020 Rui Wang
Rundong Zhao
Emily Ribando-Gros
Jiahui Chen
Yiying Tong
Guo‐Wei Wei
+ UMAP-assisted $K$-means clustering of large-scale SARS-CoV-2 mutation datasets 2020 Yuta Hozumi
Rui Wang
Changchuan Yin
Guo‐Wei Wei
+ PDF Chat Analyzing Vaccine Trials in Epidemics With Mild and Asymptomatic Infection 2018 Rebecca Kahn
Matt D. T. Hitchings
Rui Wang
Steven E. Bellan
Marc Lipsitch
Common Coauthors
Commonly Cited References
Action Title Year Authors # of times referenced
+ Mutations Strengthened SARS-CoV-2 Infectivity 2020 Jiahui Chen
Rui Wang
Menglun Wang
Guo-Wei Wei
17
+ PDF Chat GISAID: Global initiative on sharing all influenza data – from vision to reality 2017 Yuelong Shu
John W. McCauley
17
+ Genotyping coronavirus SARS-CoV-2: methods and implications 2020 Changchuan Yin
12
+ Persistent spectral graph 2020 Rui Wang
Duc Duy Nguyen
Guo‐Wei Wei
10
+ Prediction and mitigation of mutation threats to COVID-19 vaccines and antibody therapies 2021 Jiahui Chen
Kaifu Gao
Rui Wang
Guo‐Wei Wei
9
+ PDF Chat Mathematical deep learning for pose and binding affinity prediction and ranking in D3R Grand Challenges 2018 Duc Duy Nguyen
Zixuan Cang
Kedi Wu
Menglun Wang
Yin Ping Cao
Guo‐Wei Wei
8
+ PDF Chat Persistent homology analysis of protein structure, flexibility, and folding 2014 Kelin Xia
Guo‐Wei Wei
8
+ PDF Chat TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions 2017 Zixuan Cang
Guo‐Wei Wei
7
+ PDF Chat Host Immune Response Driving SARS-CoV-2 Evolution 2020 Rui Wang
Yuta Hozumi
Yong‐Hui Zheng
Changchuan Yin
Guo‐Wei Wei
7
+ PDF Chat Computing Persistent Homology 2004 Afra Zomorodian
Gunnar Carlsson
7
+ PDF Chat Representability of algebraic topology for biomolecules in machine learning based scoring and virtual screening 2018 Zixuan Cang
Lin Mu
Guo‐Wei Wei
7
+ Review of COVID-19 Antibody Therapies 2020 Jiahui Chen
Kaifu Gao
Rui Wang
Duc Duy Nguyen
Guo‐Wei Wei
6
+ Evolutionary de Rham-Hodge method 2020 Jiahui Chen
Rundong Zhao
Yiying Tong
Guo‐Wei Wei
6
+ PDF Chat Persistent Laplacian projected Omicron BA.4 and BA.5 to become new dominating variants 2022 Jiahui Chen
Yuchi Qiu
Rui Wang
Guo‐Wei Wei
6
+ Persistent homology—a survey 2008 Herbert Edelsbrunner
John Harer
6
+ PDF Chat Subgraph centrality in complex networks 2005 Ernesto Estrada
Juan A. Rodríguez‐Velázquez
6
+ Decoding Asymptomatic COVID-19 Infection and Transmission 2020 Rui Wang
Jiahui Chen
Yuta Hozumi
Changchuan Yin
Guo‐Wei Wei
6
+ Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus 2020 Bette Korber
Will Fischer
S. Gnanakaran
Hyejin Yoon
James Theiler
W. P. Abfalterer
Nicolas Hengartner
Elena E. Giorgi
Tanmoy Bhattacharya
Brian Foley
6
+ PDF Chat Generalized flexibility-rigidity index 2016 Duc Duy Nguyen
Kelin Xia
Guo‐Wei Wei
6
+ Scikit-learn: Machine Learning in Python 2012 Fabián Pedregosa
Gaël Varoquaux
Alexandre Gramfort
Vincent Michel
Bertrand Thirion
Olivier Grisel
Mathieu Blondel
Peter Prettenhofer
Ron J. Weiss
Vincent Dubourg
5
+ Mutations on COVID-19 diagnostic targets 2020 Rui Wang
Yuta Hozumi
Changchuan Yin
Guo-Wei Wei
5
+ PDF Chat Analysis and prediction of protein folding energy changes upon mutation by element specific persistent homology 2017 Zixuan Cang
Guo-Wei Wei
5
+ The de Rham–Hodge Analysis and Modeling of Biomolecules 2020 Rundong Zhao
Menglun Wang
Jiahui Chen
Yiying Tong
Guo‐Wei Wei
5
+ Spectra of combinatorial Laplace operators on simplicial complexes 2013 Danijela Horak
Jürgen Jost
4
+ PDF Chat Communicability Angle and the Spatial Efficiency of Networks 2016 Ernesto Estrada
Naomichi Hatano
4
+ PDF Chat Morse Theory for Filtrations and Efficient Computation of Persistent Homology 2013 Konstantin Mischaikow
Vidit Nanda
4
+ PDF Chat Communicability in complex networks 2008 Ernesto Estrada
Naomichi Hatano
4
+ PDF Chat Coverage in sensor networks via persistent homology 2007 Vin de Silva
Robert Ghrist
4
+ PDF Chat Multiscale Gaussian network model (mGNM) and multiscale anisotropic network model (mANM) 2015 Kelin Xia
Kristopher Opron
Guo‐Wei Wei
4
+ PDF Chat Are 2D fingerprints still valuable for drug discovery? 2020 Kaifu Gao
Duc Duy Nguyen
Vishnu Sresht
Alan M. Mathiowetz
Meihua Tu
Guo‐Wei Wei
3
+ PDF Chat Weighted persistent homology for biomolecular data analysis 2020 Zhenyu Meng
D. Vijay Anand
Yunpeng Lu
Jie Wu
Kelin Xia
3
+ PDF Chat HERMES: Persistent spectral graph software 2021 Rui Wang
Rundong Zhao
Emily Ribando-Gros
Jiahui Chen
Yiying Tong
Guo‐Wei Wei
3
+ Quantifying network heterogeneity 2010 Ernesto Estrada
3
+ PDF Chat Computing Topological Persistence for Simplicial Maps 2014 Tamal K. Dey
Fengtao Fan
Yusu Wang
3
+ Generative Network Complex for the Automated Generation of Drug-like Molecules 2020 Kaifu Gao
Duc Duy Nguyen
Meihua Tu
Guo‐Wei Wei
3
+ Decoding SARS-CoV-2 transmission, evolution and ramification on COVID-19 diagnosis, vaccine, and medicine 2020 Rui Wang
Yuta Hozumi
Changchuan Yin
Guo‐Wei Wei
3
+ De Rham-Hodge theory for Riemannian foliations 1987 Franz W. Kamber
Philippe Tondeur
3
+ Zigzag persistent homology and real-valued functions 2009 Gunnar Carlsson
Vin de Silva
Dmitriy Morozov
3
+ PDF Chat Clinical and immunological assessment of asymptomatic SARS-CoV-2 infections 2020 Quanxin Long
Xiao-Jun Tang
Q L Shi
Qin Li
Haijun Deng
Jun Yuan
Jieli Hu
Wei Xü
Yong Zhang
Fa-Jin Lv
3
+ PDF Chat Molecular Mechanism of Evolution and Human Infection with SARS-CoV-2 2020 Jiahua He
Huanyu Tao
Yumeng Yan
Sheng‐You Huang
Yi Xiao
2
+ PDF Chat Projecting the transmission dynamics of SARS-CoV-2 through the postpandemic period 2020 Stephen M. Kissler
Christine Tedijanto
Edward Goldstein
Yonatan H. Grad
Marc Lipsitch
2
+ A Lower Bound for the Smallest Eigenvalue of the Laplacian 2015 Jeff Cheeger
2
+ PDF Chat Covid-19: four fifths of cases are asymptomatic, China figures indicate 2020 Michael Day
2
+ Asymptomatic Transmission, the Achilles’ Heel of Current Strategies to Control Covid-19 2020 Monica Gandhi
Deborah S. Yokoe
Diane V. Havlir
2
+ PDF Chat Topological methods for exploring low-density states in biomolecular folding pathways 2009 Yuan Yao
Jian Sun
Xuhui Huang
Gregory R. Bowman
Satwinder Singh
Michael Lesnick
Leonidas Guibas
Vijay S. Pande
Gunnar Carlsson
2
+ Persistent spectral based machine learning (PerSpect ML) for drug design 2020 Zhenyu Meng
Kelin Xia
2
+ Evolutionary de Rham-Hodge method 2019 Jiahui Chen
Rundong Zhao
Yiying Tong
Guo‐Wei Wei
2
+ PDF Chat A review of mathematical representations of biomolecular data 2020 Duc Duy Nguyen
Zixuan Cang
Guo‐Wei Wei
2
+ Spectral Graph Theory 1996 Fan Chung
2
+ Generative network complex (GNC) for drug discovery 2019 Christopher Grow
Kaifu Gao
Duc Duy Nguyen
Guo‐Wei Wei
2