Jason Xu

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All published works

Action	Title	Year	Authors
+	The stochastic proximal distance algorithm	2024	Haoyu Jiang Jason Xu
+ PDF Chat	Inferring Covariance Structure from Multiple Data Sources via Subspace Factor Analysis	2024	Noirrit Kiran Chandra David B. Dunson Jason Xu
+ PDF Chat	A Bayesian approach for fitting semi-Markov mixture models of cancer latency to individual-level data	2024	Raphaël Morsomme Shannon T. Holloway Marc D. Ryser Jason Xu
+	Stochastic EM algorithm for partially observed stochastic epidemics with individual heterogeneity	2024	Fan Bu Allison E. Aiello Alexander Volfovsky Jason Xu
+ PDF Chat	Detecting changes in the transmission rate of a stochastic epidemic model	2024	Jenny Huang Raphaël Morsomme David B. Dunson Jason Xu
+ PDF Chat	Inferring HIV transmission patterns from viral deep-sequence data via latent typed point processes.	2024	Fan Bu Joseph Kagaayi M. Kate Grabowski Oliver Ratmann Jason Xu
+ PDF Chat	Quasi-Newton Acceleration of EM and MM Algorithms via Broyden’s Method	2023	Medha Agarwal Jason Xu
+ PDF Chat	Fitting a stochastic model of intensive care occupancy to noisy hospitalization time series during the COVID‐19 pandemic	2023	Achal Awasthi Vladimir N. Minin Jenny Huang Daniel Chow Jason Xu
+	MM optimization: Proximal distance algorithms, path following, and trust regions	2023	Alfonso Landeros Jason Xu Kenneth Lange
+	Fast Computation of Branching Process Transition Probabilities via ADMM	2023	Achal Awasthi Jason Xu
+	Inferring HIV Transmission Patterns from Viral Deep-Sequence Data via Latent Typed Point Processes	2023	Fan Bu Joseph Kagaayi Kate Grabowski Oliver Ratmann Jason Xu
+	Inferring Covariance Structure from Multiple Data Sources via Subspace Factor Analysis	2023	Noirrit Kiran Chandra David B. Dunson Jason Xu
+	Quasi-Newton Acceleration of EM and MM Algorithms via Broyden’s Method	2023	Medha Agarwal Jason Xu
+	Wi-Fi And Bluetooth Contact Tracing Without User Intervention	2022	Brosnan Yuen Yifeng Bie Duncan Cairns Geoffrey Harper Jason Xu Charles B. Chang Xiaodai Dong Tao Lü
+	Wi-Fi And Bluetooth Contact Tracing Without User Intervention	2022	Brosnan Yuen Yifeng Bie Duncan Cairns Geoffrey Harper Jason Xu Charles B. Chang Xiaodai Dong Tao Lu
+	Wi-Fi And Bluetooth Contact Tracing Without User Intervention	2022	Brosnan Yuen Yifeng Bie Duncan Cairns Geoffrey Harper Jason Xu Charles B. Chang Xiaodai Dong Tao Lü
+ PDF Chat	MITI minimum information guidelines for highly multiplexed tissue images	2022	Denis Schapiro Clarence Yapp Artem Sokolov Sheila M. Reynolds Chen Yuan Damir Sudar Yubin Xie Jeremy Muhlich Raquel Arias-Camison Sarah Arena
+	A proximal distance algorithm for likelihood-based sparse covariance estimation	2022	Jason Xu Kenneth Lange
+	A unified analysis of convex and non-convex lp-ball projection problems	2022	Joong‐Ho Won Kenneth Lange Jason Xu
+	Quasi-Newton acceleration of EM and MM algorithms via Broyden$'$s method	2022	Medha Agarwal Jason Xu
+	Wi-Fi and Bluetooth Contact Tracing Without User Intervention	2022	Brosnan Yuen Yifeng Bie Duncan Cairns Geoffrey Harper Jason Xu Charles B. Chang Xiaodai Dong Tao Lu
+	Fitting a stochastic model of intensive care occupancy to noisy hospitalization time series during the COVID-19 pandemic	2022	Achal Awasthi Vladimir N. Minin Jenny Huang Daniel Chow Jason Xu
+	Bregman Power k-Means for Clustering Exponential Family Data	2022	Adithya D Vellal Saptarshi Chakraborty Jason Xu
+	Wi-Fi and Bluetooth Contact Tracing Without User Intervention	2022	Brosnan Yuen Yifeng Bie Duncan Cairns Geoffrey Harper Jason Xu Charles B. Chang Xiaodai Dong Tao Lü
+	Exact Inference for Stochastic Epidemic Models via Uniformly Ergodic Block Sampling	2022	Raphaël Morsomme Jason Xu
+	Distance-to-Set Priors and Constrained Bayesian Inference	2022	Rick Presman Jason Xu
+	The Stochastic Proximal Distance Algorithm	2022	Haoyu Jiang Jason Xu
+	Detecting Changes in the Transmission Rate of a Stochastic Epidemic Model	2022	Jenny Huang Raphaël Morsomme David B. Dunson Jason Xu
+ PDF Chat	Computational tools for assessing gene therapy under branching process models of mutation	2021	Timothy C. Stutz Janet S. Sinsheimer Mary E. Sehl Jason Xu
+ PDF Chat	Computational tools for assessing gene therapy under branching process models of mutation	2021	Timothy C Stutz Janet S. Sinsheimer Mary E. Sehl Jason Xu
+ PDF Chat	Uniform Concentration Bounds toward a Unified Framework for Robust Clustering	2021	Debolina Paul Saptarshi Chakraborty Swagatam Das Jason Xu
+ PDF Chat	An examination of school reopening strategies during the SARS-CoV-2 pandemic	2021	Alfonso Landeros Xiang Ji Kenneth Lange Timothy C. Stutz Jason Xu Mary E. Sehl Janet S. Sinsheimer
+	SARS-CoV-2 Infection in Health Care Personnel and Their Household Contacts at a Tertiary Academic Medical Center: Protocol for a Longitudinal Cohort Study	2021	Emily J. Ciccone Paul N. Zivich Evans K. Lodge Deanna Zhu Elle A. Law Elyse Miller Jasmine Taylor Suemin Chung Jason Xu Alexander Volfovsky
+	Community Detection in Weighted Multilayer Networks with Ambient Noise	2021	Mark He Dylan Dah‐Chuan Lu Jason Xu Rose Mary Xavier
+	A Proximal Distance Algorithm for Likelihood-Based Sparse Covariance Estimation	2021	Jason Xu Kenneth Lange
+	Uniform Concentration Bounds toward a Unified Framework for Robust Clustering	2021	Debolina Paul Saptarshi Chakraborty Swagatam Das Jason Xu
+	Likelihood-based inference for partially observed stochastic epidemics with individual heterogeneity	2021	Fan Bu Allison E. Aiello Alexander Volfovsky Jason Xu
+	Computational tools for assessing gene therapy under branching process models of mutation	2021	Timothy C Stutz Janet S. Sinsheimer Mary E. Sehl Jason Xu
+	SARS-CoV-2 Infection in Health Care Personnel and Their Household Contacts at a Tertiary Academic Medical Center: Protocol for a Longitudinal Cohort Study (Preprint)	2020	Emily J. Ciccone Paul N. Zivich Evans K. Lodge Deanna Zhu Elle A. Law Elyse Miller Jasmine Taylor Suemin Chung Jason Xu Alexander Volfovsky
+	An examination of school reopening strategies during the SARS-CoV-2 pandemic	2020	Alfonso Landeros Xiang Ji Kenneth Lange Timothy C. Stutz Jason Xu Mary E. Sehl Janet S. Sinsheimer
+	Biconvex Clustering	2020	Saptarshi Chakraborty Jason Xu
+ PDF Chat	Likelihood-Based Inference for Partially Observed Epidemics on Dynamic Networks	2020	Fan Bu Allison E. Aiello Jason Xu Alexander Volfovsky
+	A Scalable Framework for Sparse Clustering Without Shrinkage	2020	Zhiyue Zhang Kenneth Lange Jason Xu
+	Entropy Regularized Power k-Means Clustering	2020	Saptarshi Chakraborty Debolina Paul Swagatam Das Jason Xu
+	Simple and Scalable Sparse k-means Clustering via Feature Ranking	2020	Zhiyue Zhang Kenneth Lange Jason Xu
+	Kernel k-Means, By All Means: Algorithms and Strong Consistency	2020	Debolina Paul Saptarshi Chakraborty Swagatam Das Jason Xu
+	Likelihood-Based Inference for Partially Observed Epidemics on Dynamic Networks	2020	Fan Bu Allison E. Aiello Jason Xu Alexander Volfovsky
+	Biconvex Clustering	2020	Saptarshi Chakraborty Jason Xu
+	Statistical inference for partially observed branching processes with application to cell lineage tracking of in vivo hematopoiesis	2019	Jason Xu Samson Koelle Peter Guttorp Chuanfeng Wu Cynthia E. Dunbar Janis L. Abkowitz Vladimir N. Minin
+	Likelihood-based Inference for Partially Observed Epidemics on Dynamic Networks	2019	Fan Bu Allison E. Aiello Jason Xu Alexander Volfovsky
+	A majorization–minimization algorithm for split feasibility problems	2018	Jason Xu C. Eric Meng Yang Kenneth Lange
+	Combination of Hyperband and Bayesian Optimization for Hyperparameter Optimization in Deep Learning	2018	Jiazhuo Wang Jason Xu Xuejun Wang
+	Structural Risk Minimization for $C^{1,1}(\mathbb{R}^d)$ Regression	2018	Adam Gustafson Matthew Hirn Kitty Mohammed Hariharan Narayanan Jason Xu
+	Generalized Linear Model Regression under Distance-to-set Penalties	2017	Jason Xu C. Eric Kenneth Lange
+ PDF Chat	Birth/birth-death processes and their computable transition probabilities with biological applications	2017	Lam Si Tung Ho Jason Xu Forrest W. Crawford Vladimir N. Minin Marc A. Suchard
+	Generalized Linear Model Regression under Distance-to-set Penalties	2017	Jason Xu C. Eric Kenneth Lange
+	Likelihood-Based Inference for Partially Observed Multi-Type Markov Branching Processes	2016	Jason Xu
+	Birth(death)/birth-death processes and their computable transition probabilities with statistical applications	2016	Lam Si Tung Ho Jason Xu Forrest W. Crawford Vladimir N. Minin Marc A. Suchard
+	Birth/birth-death processes and their computable transition probabilities with biological applications	2016	Lam Si Tung Ho Jason Xu Forrest W. Crawford Vladimir N. Minin Marc A. Suchard
+	An MM Algorithm for Split Feasibility Problems	2016	Jason Xu C. Eric Meng Yang Kenneth Lange
+	Statistical inference in partially observed branching processes with application to cell lineage tracking of in vivo hematopoiesis	2016	Jason Xu Samson Koelle Peter Guttorp Chuanfeng Wu Cynthia E. Dunbar Janis L. Abkowitz Vladimir N. Minin
+	Birth/birth-death processes and their computable transition probabilities with biological applications	2016	Lam Tung Ho Jason Xu Forrest W. Crawford Vladimir N. Minin Marc A. Suchard
+ PDF Chat	Likelihood-Based Inference for Discretely Observed Birth–Death-Shift Processes, with Applications to Evolution of Mobile Genetic Elements	2015	Jason Xu Peter Guttorp Midori Kato‐Maeda Vladimir N. Minin
+	Efficient Transition Probability Computation for Continuous-Time Branching Processes via Compressed Sensing	2015	Jason Xu Vladimir N. Minin
+	Efficient Transition Probability Computation for Continuous-Time Branching Processes via Compressed Sensing	2015	Jason Xu Vladimir N. Minin
+	Stochastic Variational Inference for Hidden Markov Models	2014	Nicholas J. Foti Jason Xu Dillon Laird Emily B. Fox
+	Likelihood-Based Inference for Discretely Observed Birth-Death-Shift Processes, with Applications to Evolution of Mobile Genetic Elements	2014	Jason Xu Peter Guttorp Midori Kato‐Maeda Vladimir N. Minin
+	Stochastic Variational Inference for Hidden Markov Models	2014	Nicholas J. Foti Jason Xu Dillon Laird Emily B. Fox
+ PDF Chat	Bounds on the artificial phase transition for perfect simulation of hard core Gibbs processes	2012	Mark Huber Elise Villella Daniel Rozenfeld Jason Xu
+	Bounds on the artificial phase transition for perfect simulation of repulsive point processes	2010	Mark Huber Elise McCall Daniel Rozenfeld Jason Xu

Common Coauthors

Coauthor	Papers Together
Vladimir N. Minin	12
Kenneth Lange	11
Fan Bu	7
Allison E. Aiello	7
Alexander Volfovsky	7
Geoffrey Harper	5
Yifeng Bie	5
Mary E. Sehl	5
Duncan Cairns	5
Xiaodai Dong	5
Charles B. Chang	5
Janet S. Sinsheimer	5
Brosnan Yuen	5
Saptarshi Chakraborty	5
Forrest W. Crawford	4
Debolina Paul	4
Peter Guttorp	4
Raphaël Morsomme	4
Marc A. Suchard	4
Jenny Huang	4
David B. Dunson	4
C. Eric	4
Swagatam Das	4
Medha Agarwal	3
Achal Awasthi	3
Alfonso Landeros	3
Lam Si Tung Ho	3
Timothy C. Stutz	3
Cherese Beatty	2
Suemin Chung	2
Emily B. Fox	2
Haley E Garrett	2
Meghan E. Rebuli	2
Noirrit Kiran Chandra	2
Deanna Zhu	2
Nicholas J. Foti	2
Subhashini Sellers	2
Alena J. Markmann	2
Janis L. Abkowitz	2
Meng Yang	2
Daniel Chow	2
Zhiyue Zhang	2
Evans K. Lodge	2
Midori Kato‐Maeda	2
Elise King	2
Samson Koelle	2
Marc D. Ryser	2
Raquel Reyes	2
Timothy C Stutz	2
Daniel Rozenfeld	2

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+	Maximum Likelihood from Incomplete Data Via the <i>EM</i> Algorithm	1977	A. P. Dempster N. M. Laird Donald B. Rubin	9
+ PDF Chat	Distance majorization and its applications	2013	C. Eric Hua Zhou Kenneth Lange	8
+	Regression Shrinkage and Selection Via the Lasso	1996	Robert Tibshirani	8
+ PDF Chat	Likelihood-Based Inference for Discretely Observed Birth–Death-Shift Processes, with Applications to Evolution of Mobile Genetic Elements	2015	Jason Xu Peter Guttorp Midori Kato‐Maeda Vladimir N. Minin	8
+ PDF Chat	Particle Markov Chain Monte Carlo Methods	2010	Christophe Andrieu Arnaud Doucet Roman Holenstein	7
+ PDF Chat	Incremental Majorization-Minimization Optimization with Application to Large-Scale Machine Learning	2015	Julien Mairal	7
+ PDF Chat	Transition probabilities for general birth–death processes with applications in ecology, genetics, and evolution	2011	Forrest W. Crawford Marc A. Suchard	6
+	Statistical Inference in a Two‐Compartment Model for Hematopoiesis	2001	Sandra N. Catlin Janis L. Abkowitz Peter Guttorp	6
+ PDF Chat	Likelihood-Based Inference for Partially Observed Epidemics on Dynamic Networks	2020	Fan Bu Allison E. Aiello Jason Xu Alexander Volfovsky	5
+	A contribution to the mathematical theory of epidemics	1927	W. O. Kermack A. G. McKendrick	5
+	Fitting birth–death processes to panel data with applications to bacterial DNA fingerprinting	2013	Charles R. Doss Marc A. Suchard Ian Holmes Midori Kato‐Maeda Vladimir N. Minin	5
+	A Fast Iterative Shrinkage-Thresholding Algorithm for Linear Inverse Problems	2009	Amir Beck Marc Teboulle	5
+ PDF Chat	Birth/birth-death processes and their computable transition probabilities with biological applications	2017	Lam Si Tung Ho Jason Xu Forrest W. Crawford Vladimir N. Minin Marc A. Suchard	5
+	Proximal Algorithms in Statistics and Machine Learning	2015	Nicholas G. Polson James G. Scott Brandon T. Willard	5
+ PDF Chat	Stochastic epidemic models: A survey	2010	Tom Britton	5
+ PDF Chat	Contact tracing and disease control	2003	Ken Eames Matt J. Keeling	5
+ PDF Chat	Estimation for General Birth-Death Processes	2013	Forrest W. Crawford Vladimir N. Minin Marc A. Suchard	5
+ PDF Chat	Likelihood-based estimation of continuous-time epidemic models from time-series data: application to measles transmission in London	2008	Simon Cauchemez Neil M. Ferguson	5
+ PDF Chat	A Soft Range Limited K-Nearest Neighbors Algorithm for Indoor Localization Enhancement	2018	Minh Tu Hoang Yizhou Zhu Brosnan Yuen Tyler Reese Xiaodai Dong Tao Lü Robert Westendorp Sang Michael Xie	4
+ PDF Chat	Epidemic models on social networks—With inference	2020	Tom Britton	4
+	Generalized Linear Model Regression under Distance-to-set Penalties	2017	Jason Xu C. Eric Kenneth Lange	4
+	Robust Positioning Systems in the Presence of Outliers Under Weak GPS Signal Conditions	2011	Kia Fallahi Chi‐Tsun Cheng M. Fattouche	4
+	First-Order Methods in Optimization	2017	Amir Beck	4
+ PDF Chat	Spatial birth–death swap chains	2012	Mark Huber	4
+ PDF Chat	SARS-CoV-2 (COVID-19) superspreader events	2020	Dasha Majra Jayme D. Benson Jennifer M. Pitts Justin Stebbing	4
+ PDF Chat	FEEL: Fast, Energy-Efficient Localization for Autonomous Indoor Vehicles	2021	Vineet Gokhale Gerardo Moyers Barrera Ramjee Prasad	4
+ PDF Chat	Time Series Modelling of Childhood Diseases: A Dynamical Systems Approach	2000	Bärbel Finkenstädt Bryan T. Grenfell	4
+ PDF Chat	A QR Code–Based Contact Tracing Framework for Sustainable Containment of COVID-19: Evaluation of an Approach to Assist the Return to Normal Activity	2020	Ichiro Nakamoto Sheng Wang Yan Guo Weiqing Zhuang	4
+	Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (SARS-CoV-2)	2020	Ruiyun Li Sen Pei Бин Чэн Yimeng Song Zhang Tao Wan Yang Jeffrey Shaman	4
+	Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties	2001	Jianqing Fan Runze Li	4
+ PDF Chat	Acceptability of App-Based Contact Tracing for COVID-19: Cross-Country Survey Study	2020	Samuel Altmann Luke Milsom Hannah Zillessen Raffaele Blasone Frederic Gerdon Ruben L. Bach Frauke Kreuter Daniele Nosenzo Séverine Toussaert Johannes Abeler	4
+ PDF Chat	Recurrent Neural Networks for Accurate RSSI Indoor Localization	2019	Minh Tu Hoang Brosnan Yuen Xiaodai Dong Tao Lü Robert Westendorp Kishore Reddy	4
+ PDF Chat	A Study of MAC Address Randomization in Mobile Devices and When it Fails	2017	Jeremy Martin Travis Mayberry Collin Donahue Lucas Foppe Lamont Brown Chadwick Riggins Erik C. Rye Dane Brown	4
+	A ROS2 based communication architecture for control in collaborative and intelligent automation systems	2019	Endre Erős Martin Dahl Kristofer Bengtsson Atieh Hanna Petter Falkman	4
+	WiFiTrace: Network-based Contact Tracing for Infectious Diseases Using Passive WiFi Sensing.	2020	Amee Trivedi Camellia Zakaria Rajesh Krishna Balan Prashant Shenoy	4
+ PDF Chat	EM algorithms without missing data	1997	Mark P. Becker Ilsoon Yang Kenneth Lange	4
+	Stochastic modeling of stress erythropoiesis using a two-type age-dependent branching process with immigration	2014	Ollivier Hyrien Scott A. Peslak Nikolay M. Yanev James Palis	3
+ PDF Chat	Direct likelihood-based inference for discretely observed stochastic compartmental models of infectious disease	2018	Lam Si Tung Ho Forrest W. Crawford Marc A. Suchard	3
+	A majorization–minimization algorithm for split feasibility problems	2018	Jason Xu C. Eric Meng Yang Kenneth Lange	3
+	Stochasticity and Determinism in Models of Hematopoiesis	2014	Marek Kimmel	3
+	Fast MCMC sampling for Markov jump processes and continuous time Bayesian networks	2012	Vinayak Rao Yee Whye Teh	3
+	A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation	2014	Juliane Liepe Paul Kirk Sarah Filippi Tina Toni C. Barnes Michael P. H. Stumpf	3
+	The relaxation method of finding the common point of convex sets and its application to the solution of problems in convex programming	1967	L.M. Bregman	3
+	A Selective Overview of Variable Selection in High Dimensional Feature Space.	2010	Jianqing Fan Jinchi Lv	3
+ PDF Chat	<b>MCMCpack</b>: Markov Chain Monte Carlo in<i>R</i>	2011	Andrew D. Martin Kevin M. Quinn Jong Hee Park	3
+ PDF Chat	Sparsity and Smoothness Via the Fused Lasso	2004	Robert Tibshirani Michael A. Saunders Saharon Rosset Ji Zhu Keith Knight	3
+	None	2000	Arnaud Doucet Simon Godsill Christophe Andrieu	3
+	The Numerical Analysis of Ordinary Differential Equations; Runge-Kutta and General Linear Methods.	1988	Kenneth R. Jackson J. C. Butcher	3
+ PDF Chat	Decoding by Linear Programming	2005	Emmanuel J. Candès Terence Tao	3
+ PDF Chat	Nineteen Dubious Ways to Compute the Exponential of a Matrix, Twenty-Five Years Later	2003	C Moler Charles Van Loan	3