Martin J. O’Connor

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All published works

Action	Title	Year	Authors
+ PDF Chat	Ensuring Adherence to Standards in Experiment-Related Metadata Entered Via Spreadsheets	2024	Martin J. O’Connor Josef Hardi Marcos Martínez-Romero Sivachandran Somasundaram Brendan John Honick Stephen Fisher Ajay Pillai Mark A. Musen
+	A Comprehensive Approach to Ensuring Quality in Spreadsheet-Based Metadata	2023	Martin J. O’Connor Marcos Martínez-Romero Mete Ugur Akdogan Josef Hardi Mark A. Musen
+ PDF Chat	Modeling community standards for metadata as templates makes data FAIR	2022	Mark A. Musen Martin J. O’Connor Erik Schultes Marcos Martínez-Romero Josef Hardi John Graybeal
+	Modeling community standards for metadata as templates makes data FAIR	2022	Mark A. Musen Martin J. O’Connor Erik Schultes Marcos Martínez-Romero Josef Hardi John Graybeal
+ PDF Chat	Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases	2019	Marcos Martínez-Romero Martin J. O’Connor Attila L. Egyedi Debra Willrett Josef Hardi John Graybeal Mark A. Musen
+ PDF Chat	NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation	2017	Marcos Martínez-Romero Clément Jonquet Martin J. O’Connor John Graybeal Alejandro Pazos Mark A. Musen
+	Metadata in the BioSample Online Repository are Impaired by Numerous Anomalies	2017	Rafael S. Gonçalves Martin J. O’Connor Marcos Martínez-Romero John Graybeal Mark A. Musen
+ PDF Chat	The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments	2017	Rafael S. Gonçalves Martin J. O’Connor Marcos Martínez-Romero Attila L. Egyedi Debra Willrett John Graybeal Mark A. Musen
+ PDF Chat	NCBO Ontology Recommender 2.0: An Enhanced Approach for Biomedical Ontology Recommendation	2016	Marcos Martínez-Romero Clément Jonquet Martin J. O’Connor John Graybeal Alejandro Pazos Mark A. Musen
+	Automated Tracking of Quantitative Assessments of Tumor Burden in Clinical Trials	2014	Daniel L. Rubin Debra Willrett Martin J. O’Connor Cleber Hage Camille Kurtz Dilvan A. Moreira

Common Coauthors

Coauthor	Papers Together
Mark A. Musen	9
Marcos Martínez-Romero	9
John Graybeal	7
Josef Hardi	5
Debra Willrett	3
Erik Schultes	2
Rafael S. Gonçalves	2
Clément Jonquet	2
Alejandro Pazos	2
Attila L. Egyedi	2
Mete Ugur Akdogan	1
Dilvan A. Moreira	1
Stephen Fisher	1
Cleber Hage	1
Brendan John Honick	1
Sivachandran Somasundaram	1
Ajay Pillai	1
Camille Kurtz	1
Daniel L. Rubin	1

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+ PDF Chat	The variable quality of metadata about biological samples used in biomedical experiments	2019	Rafael S. Gonçalves Mark A. Musen	2
+ PDF Chat	The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments	2017	Rafael S. Gonçalves Martin J. O’Connor Marcos Martínez-Romero Attila L. Egyedi Debra Willrett John Graybeal Mark A. Musen	2
+ PDF Chat	Phase II Oncology Trials: Let's Be Positive	2005	Mark J. Ratain	1
+ PDF Chat	A simulation study to evaluate the impact of the number of lesions measured on response assessment	2008	Chaya S. Moskowitz Xiaoyu Jia Lawrence H. Schwartz Mithat Gönen	1
+	Review of Phase II Trial Designs Used in Studies of Molecular Targeted Agents: Outcomes and Predictors of Success in Phase III	2008	Robert H. El-Maraghi Elizabeth A. Eisenhauer	1
+ PDF Chat	The human body at cellular resolution: the NIH Human Biomolecular Atlas Program	2019	M Snyder Shin Lin Amanda L. Posgai Mark A. Atkinson Aviv Regev Jennifer Rood Orit Rozenblatt–Rosen Leslie Gaffney Anna Hupalowska Rahul Satija	1
+ PDF Chat	Aber-OWL: a framework for ontology-based data access in biology	2015	Robert Hoehndorf Luke T. Slater Paul N. Schofield Georgios V. Gkoutos	1
+	Individual patient data analysis to assess modifications to the RECIST criteria	2008	Jan Bogaerts Robert Ford Daniel J. Sargent Lawrence H. Schwartz Larry Rubinstein Denis Lacombe Elizabeth A. Eisenhauer Jaap Verweij Patrick Therasse	1
+ PDF Chat	Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases	2019	Marcos Martínez-Romero Martin J. O’Connor Attila L. Egyedi Debra Willrett Josef Hardi John Graybeal Mark A. Musen	1
+	End Points and United States Food and Drug Administration Approval of Oncology Drugs	2003	John R. Johnson Grant Williams Richard Pazdur	1