Zina Ibrahim

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All published works

Action	Title	Year	Authors
+ PDF Chat	How Deep is your Guess? A Fresh Perspective on Deep Learning for Medical Time-Series Imputation	2024	Linglong Qian Tao Wang Jun Wang H Ellis Robin Mitra Richard Dobson Zina Ibrahim
+ PDF Chat	TSI-Bench: Benchmarking Time Series Imputation	2024	Wenjie Du Jun Wang Linglong Qian Yiyuan Yang Fanxing Liu Zepu Wang Zina Ibrahim Haoxin Liu Zhiyuan Zhao Yingjie Zhou
+ PDF Chat	Unveiling the Secrets: How Masking Strategies Shape Time Series Imputation	2024	Linglong Qian Zina Ibrahim Wenjie Du Yiyuan Yang Richard Dobson
+	Uncertainty-Aware Deep Attention Recurrent Neural Network for Heterogeneous Time Series Imputation	2024	Linglong Qian Zina Ibrahim Richard Dobson
+	Discharge summary hospital course summarisation of in patient Electronic Health Record text with clinical concept guided deep pre-trained Transformer models	2023	Thomas Searle Zina Ibrahim James Teo Richard Dobson
+	Exploring Multimodal Large Language Models for Radiology Report Error-checking	2023	Jinge Wu Yunsoo Kim Eva C. Keller Jamie Chow Adam P. Levine Nikolas Pontikos Zina Ibrahim Paul Taylor Michelle C. Williams Honghan Wu
+	Knowledge Enhanced Conditional Imputation for Healthcare Time-series	2023	Linglong Qian Zina Ibrahim H Ellis Ao Zhang Yuezhou Zhang Tao Wang Richard Dobson
+	Discharge Summary Hospital Course Summarisation of In Patient Electronic Health Record Text with Clinical Concept Guided Deep Pre-Trained Transformer Models	2022	Thomas Searle Zina Ibrahim James Teo Richard Dobson
+	Estimating redundancy in clinical text	2021	Thomas Searle Zina Ibrahim James Teo Richard Dobson
+	Estimating Redundancy in Clinical Text	2021	Thomas Searle Zina Ibrahim James Teo Richard Dobson
+ PDF Chat	Multi-domain clinical natural language processing with MedCAT: The Medical Concept Annotation Toolkit	2021	Željko Kraljević Thomas Searle Anthony Shek Łukasz Roguski Kawsar Noor Daniel Bean Aurelie Mascio Leilei Zhu Amos Folarin Angus Roberts
+	Estimating Redundancy in Clinical Text	2021	Thomas Searle Zina Ibrahim James Teo Richard Dobson
+ PDF Chat	The side effect profile of Clozapine in real world data of three large mental health hospitals	2020	Ehtesham Iqbal Risha Govind Alvin Romero Olubanké Dzahini Matthew Broadbent Robert Stewart Tanya Smith Chi-Hun Kim Nomi Werbeloff James H. MacCabe
+	A Knowledge Distillation Ensemble Framework for Predicting Short and Long-term Hospitalisation Outcomes from Electronic Health Records Data	2020	Zina Ibrahim Daniel Bean Thomas Searle Honghan Wu Anthony Shek Željko Kraljević James Galloway Sam Norton James Teo Richard Dobson
+ PDF Chat	Comparing Natural Language Processing Techniques for Alzheimer’s Dementia Prediction in Spontaneous Speech	2020	Thomas Searle Zina Ibrahim Richard Dobson
+	Multi-domain Clinical Natural Language Processing with MedCAT: the Medical Concept Annotation Toolkit	2020	Željko Kraljević Thomas Searle Anthony Shek Łukasz Roguski Kawsar Noor Daniel Bean Aurelie Mascio Leilei Zhu Amos Folarin Angus Roberts
+	Experimental Evaluation and Development of a Silver-Standard for the MIMIC-III Clinical Coding Dataset	2020	Thomas Searle Zina Ibrahim Richard Dobson
+ PDF Chat	Experimental Evaluation and Development of a Silver-Standard for the MIMIC-III Clinical Coding Dataset	2020	Thomas Searle Zina Ibrahim Richard Dobson
+	Identifying physical health comorbidities in a cohort of individuals with severe mental illness: An application of SemEHR	2020	Rebecca Bendayan Honghan Wu Željko Kraljević Robert Stewart Thomas Searle Jaya Chaturvedi Jayati Das‐Munshi Zina Ibrahim Aurelie Mascio Angus Roberts
+	Modeling Rare Interactions in Time Series Data Through Qualitative Change: Application to Outcome Prediction in Intensive Care Units	2020	Zina Ibrahim Honghan Wu Richard Dobson
+	Experimental Evaluation and Development of a Silver-Standard for the MIMIC-III Clinical Coding Dataset	2020	Thomas Searle Zina Ibrahim Richard Dobson
+	A Knowledge Distillation Ensemble Framework for Predicting Short and Long-term Hospitalisation Outcomes from Electronic Health Records Data	2020	Zina Ibrahim Daniel W. Bean Thomas Searle Honghan Wu Anthony Shek Željko Kraljević James Galloway Sam Norton James Teo Richard Dobson
+	Multi-domain Clinical Natural Language Processing with MedCAT: the Medical Concept Annotation Toolkit	2020	Željko Kraljević Thomas Searle Anthony Shek Łukasz Roguski Kawsar Noor Daniel W. Bean Aurelie Mascio Leilei Zhu Amos Folarin Angus Roberts
+	Comparing Natural Language Processing Techniques for Alzheimer's Dementia Prediction in Spontaneous Speech	2020	Thomas Searle Zina Ibrahim Richard Dobson
+ PDF Chat	On classifying sepsis heterogeneity in the ICU: insight using machine learning	2019	Zina Ibrahim Honghan Wu Ahmed Hamoud Lukas Stappen Richard Dobson Andrea Agarossi
+	Efficient Reuse of Natural Language Processing Models for Phenotype-Mention Identification in Free-text Electronic Medical Records: A Phenotype Embedding Approach	2019	Honghan Wu Karen Hodgson Sue Dyson Katherine I. Morley Zina Ibrahim Ehtesham Iqbal Robert Stewart Richard Dobson Cathie Sudlow
+	Contextualised concept embedding for efficiently adapting natural language processing models for phenotype identification.	2019	Honghan Wu Karen Hodgson Sue Dyson Katherine I. Morley Zina Ibrahim Ehtesham Iqbal Robert Stewart Richard Dobson Cathie Sudlow
+	Predicting Adverse Events from Multiple and Dynamic Medication Episodes – a preliminary result in a large mental health registry	2016	Honghan Wu Zina Ibrahim Ehtesham Iqbal Richard Dobson

Common Coauthors

Coauthor	Papers Together
Richard Dobson	26
Thomas Searle	16
James Teo	10
Honghan Wu	9
Robert Stewart	7
Željko Kraljević	6
Linglong Qian	5
Anthony Shek	5
Rebecca Bendayan	4
Daniel Bean	4
Ehtesham Iqbal	4
Aurelie Mascio	4
Angus Roberts	4
Wai Keong Wong	3
Kawsar Noor	3
Łukasz Roguski	3
Amos Folarin	3
Anoop D Shah	3
Cathie Sudlow	2
Jun Wang	2
Tao Wang	2
Daniel W. Bean	2
Yiyuan Yang	2
Wenjie Du	2
H Ellis	2
James Galloway	2
Katherine I. Morley	2
Karen Hodgson	2
Leilei Zhu	2
Sam Norton	2
Sue Dyson	2
Mark P. Richardson	2
Tanya Smith	1
Mark Richardson	1
Zepu Wang	1
Ahmed Hamoud	1
Chi-Hun Kim	1
Nomi Werbeloff	1
Haoxin Liu	1
Yuezhou Zhang	1
Risha Govind	1
Yuxuan Liang	1
Lukas Stappen	1
Paul Taylor	1
Michelle C. Williams	1
Ao Zhang	1
Yingjie Zhou	1
Kaize Ding	1
Robin Mitra	1
Qingsong Wen	1

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+	MedCATTrainer: A Biomedical Free Text Annotation Interface with Active Learning and Research Use Case Specific Customisation	2019	Thomas Searle Željko Kraljević Rebecca Bendayan Daniel Bean Richard Dobson	5
+ PDF Chat	Deep representation learning of electronic health records to unlock patient stratification at scale	2020	Isotta Landi Benjamin S. Glicksberg Hao-Chih Lee Sarah T. Cherng Giulia Landi Matteo Danieletto Joel T. Dudley Cesare Furlanello Riccardo Miotto	4
+ PDF Chat	Multi-domain clinical natural language processing with MedCAT: The Medical Concept Annotation Toolkit	2021	Željko Kraljević Thomas Searle Anthony Shek Łukasz Roguski Kawsar Noor Daniel Bean Aurelie Mascio Leilei Zhu Amos Folarin Angus Roberts	3
+	Decoupled Weight Decay Regularization	2017	Ilya Loshchilov Frank Hutter	2
+ PDF Chat	Multicentre validation of a sepsis prediction algorithm using only vital sign data in the emergency department, general ward and ICU	2018	Qingqing Mao Melissa Jay Jana Hoffman Jacob Calvert Christopher Barton David Shimabukuro Lisa Shieh Uli K. Chettipally Grant Fletcher Yaniv Kerem	2
+ PDF Chat	Comparative Analysis of Text Classification Approaches in Electronic Health Records	2020	Aurelie Mascio Željko Kraljević Daniel Bean Richard Dobson Robert Stewart Rebecca Bendayan Angus Roberts	2
+ PDF Chat	Get To The Point: Summarization with Pointer-Generator Networks	2017	Abigail See Peter J. Liu Christopher D. Manning	2
+	A Simple Theoretical Model of Importance for Summarization	2019	Maxime Peyrard	2
+	Explainable Prediction of Medical Codes from Clinical Text	2018	James Mullenbach Sarah Wiegreffe Jon Duke Jimeng Sun Jacob Eisenstein	2
+	Distributed Representations of Words and Phrases and their Compositionality	2013	Tomáš Mikolov Ilya Sutskever Kai Chen Greg S. Corrado Jay B. Dean	2
+	XLNet: Generalized Autoregressive Pretraining for Language Understanding	2019	Zhilin Yang Zihang Dai Yiming Yang Jaime Carbonell Ruslan Salakhutdinov Quoc V. Le	2
+	On Wasserstein Two Sample Testing and Related Families of Nonparametric Tests	2015	Aaditya Ramdas Nicolás Rubio García Marco Cuturi	2
+ PDF Chat	A Neural Architecture for Automated ICD Coding	2018	Pengtao Xie Eric P. Xing	2
+	Multi-Label Classification of Patient Notes a Case Study on ICD Code Assignment	2017	Tal Baumel Jumana Nassour-Kassis Raphael Cohen Michael Elhadad Noémie Elhadad	2
+ PDF Chat	Enriching Word Vectors with Subword Information	2017	Piotr Bojanowski Édouard Grave Armand Joulin Tomáš Mikolov	2
+	Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformer	2019	Colin Raffel Noam Shazeer Adam Roberts Katherine Lee Sharan Narang Michael Matena Yanqi Zhou Wei Li Peter J. Liu	2
+	MedCAT -- Medical Concept Annotation Tool	2019	Željko Kraljević Daniel Bean Aurelie Mascio Łukasz Roguski Amos Folarin Angus Roberts Rebecca Bendayan Richard Dobson	2
+	BERTScore: Evaluating Text Generation with BERT	2020	Tianyi Zhang Varsha Kishore Felix Wu Kilian Q. Weinberger Yoav Artzi	2
+	Distributed Representations of Words and Phrases and their Compositionality	2013	Tomáš Mikolov Ilya Sutskever Kai Chen Greg S. Corrado Jeffrey Dean	2
+ PDF Chat	MedSTS: a resource for clinical semantic textual similarity	2018	Yanshan Wang Naveed Afzal Sunyang Fu Liwei Wang Feichen Shen Majid Rastegar-Mojarad Hongfang Liu	2
+	BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding	2018	Jacob Devlin Ming‐Wei Chang Kenton Lee Kristina Toutanova	2
+	Cross-type biomedical named entity recognition with deep multi-task learning	2018	Xuan Wang Yu Zhang Xiang Ren Yuhao Zhang Marinka Žitnik Jingbo Shang Curtis P. Langlotz Jiawei Han	2
+	COVID-19: The forgotten priorities of the pandemic	2020	Cristina Mesa-Vieira Oscar H. Franco Carlos Gómez–Restrepo Thomas Abel	2
+ PDF Chat	An empirical evaluation of deep learning for ICD-9 code assignment using MIMIC-III clinical notes	2019	Jinmiao Huang César García‐Osorio Luke Sy	2
+	Multivariate Spearman's rho for Aggregating Ranks Using Copulas	2016	Justin Bedő Cheng Soon Ong	1
+	Beat by Beat: Classifying Cardiac Arrhythmias with Recurrent Neural Networks	2017	Patrick Schwab Gaetano Scebba Jia Zhang Marco Delai Walter Karlen	1
+	RoBERTa: A Robustly Optimized BERT Pretraining Approach	2019	Yinhan Liu Myle Ott Naman Goyal Jingfei Du Mandar Joshi Danqi Chen Omer Levy Mike Lewis Luke Zettlemoyer Veselin Stoyanov	1
+	Sentence-BERT: Sentence Embeddings using Siamese BERT-Networks	2019	Nils Reimers Iryna Gurevych	1
+	DistilBERT, a distilled version of BERT: smaller, faster, cheaper and lighter	2019	Victor Sanh Lysandre Debut Julien Chaumond Thomas Wolf	1
+	Extracting UMLS Concepts from Medical Text Using General and Domain-Specific Deep Learning Models	2019	Kathleen Fraser Isar Nejadgholi Berry de Bruijn Muqun Li Astha LaPlante Khaldoun Zine El Abidine	1
+	HuggingFace's Transformers: State-of-the-art Natural Language Processing	2019	Thomas Wolf Lysandre Debut Victor Sanh Julien Chaumond Clément Delangue Anthony Moi Pierric Cistac Tim Rault Rémi Louf Morgan Funtowicz	1
+	Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation	2019	Kexin Huang Abhishek Singh Sitong Chen Edward T. Moseley Chih-Ying Deng Naomi George Charlotta Lindvall	1
+ PDF Chat	Clinical Concept Embeddings Learned from Massive Sources of Multimodal Medical Data	2019	Andrew L. Beam Benjamin Kompa Allen Schmaltz Inbar Fried Griffin M. Weber Nathan Palmer Xu Shi Tianxi Cai Isaac S. Kohane	1
+	Longformer: The Long-Document Transformer	2020	Iz Beltagy Matthew E. Peters Arman Cohan	1
+	BART: Denoising Sequence-to-Sequence Pre-training for Natural Language Generation, Translation, and Comprehension	2020	Mike Lewis Yinhan Liu Naman Goyal Marjan Ghazvininejad Abdelrahman Mohamed Omer Levy Veselin Stoyanov Luke Zettlemoyer	1
+	A Machine Learning Early Warning System: Multicenter Validation in Brazilian Hospitals	2020	Jhonatan Kobylarz Henrique D. P. dos Santos Felipe Barletta Mateus Cichelero da Silva Renata Vieira Hugo Manuel Paz Morales Cristian da Costa Rocha	1
+ PDF Chat	Leveraging Pre-trained Checkpoints for Sequence Generation Tasks	2020	Sascha Rothe Shashi Narayan Aliaksei Severyn	1
+	Unsupervised anomaly detection for discrete sequence healthcare data	2020	Victoria Snorovikhina Alexey Zaytsev	1
+ PDF Chat	Alzheimer’s Dementia Recognition Through Spontaneous Speech: The ADReSS Challenge	2020	Saturnino Luz Fasih Haider Sofia de la Fuente Garcia Davida Fromm Brian MacWhinney	1
+	Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation	2020	Kexin Huang Abhishek Singh Sitong Chen Edward T. Moseley Chih-Ying Deng Naomi George Charolotta Lindvall	1
+ PDF Chat	ScispaCy: Fast and Robust Models for Biomedical Natural Language Processing	2019	Mark E Neumann Daniel King Iz Beltagy Waleed Ammar	1
+ PDF Chat	A Primer in BERTology: What We Know About How BERT Works	2020	Anna Rogers Olga Kovaleva Anna Rumshisky	1
+ PDF Chat	SummEval: Re-evaluating Summarization Evaluation	2021	Alexander R. Fabbri Wojciech Kryściński Bryan McCann Caiming Xiong Richard Socher Dragomir Radev	1
+ PDF Chat	Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems	2021	Gonzalo Gabriel Méndez Gonzalo Gabriel Méndez Katherine Chiluiza	1
+ PDF Chat	An artificial intelligence system for predicting the deterioration of COVID-19 patients in the emergency department	2021	Farah E. Shamout Yiqiu Shen Nan Wu Aakash Kaku Jungkyu Park Taro Makino Stanisław Jastrzȩbski Jan Witowski Duo Wang Ben Zhang	1
+	Estimating redundancy in clinical text	2021	Thomas Searle Zina Ibrahim James Teo Richard Dobson	1
+	A Survey of Evaluation Metrics Used for NLG Systems	2020	Ananya B. Sai Akash Kumar Mohankumar Mitesh M. Khapra	1
+	Bio-YODIE: A Named Entity Linking System for Biomedical Text	2018	Genevieve Gorrell Xingyi Song Angus Roberts	1
+	Multi-Label Classification of Patient Notes a Case Study on ICD Code Assignment	2017	Tal Baumel Jumana Nassour-Kassis Raphaël Cohen Michael Elhadad Noémie Elhadad	1
+	On Wasserstein Two Sample Testing and Related Families of Nonparametric Tests	2015	Aaditya Ramdas N. Garcı́a Marco Cuturi	1