Austin D. Swafford

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All published works

Action	Title	Year	Authors
+	Bayesian multivariate sparse functional principal components analysis with application to longitudinal microbiome multiomics data	2022	Lingjing Jiang Chris Elrod Jane J. Kim Austin D. Swafford Rob Knight Wesley K. Thompson
+ PDF Chat	Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data	2021	Lingjing Jiang Niina Haiminen Anna Paola Carrieri Shi Huang Yoshiki Vázquez‐Baeza Laxmi Parida Ho‐Cheol Kim Austin D. Swafford Rob Knight Loki Natarajan
+	Multi-Block Sparse Functional Principal Components Analysis for Longitudinal Microbiome Multi-Omics Data	2021	Lingjing Jiang Chris Elrod Jane J. Kim Austin D. Swafford Rob Knight Wesley K. Thompson
+	Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data	2020	Lingjing Jiang Niina Haiminen Anna Paola Carrieri Shi Huang Yoshiki Vázquez‐Baeza Laxmi Parida Ho‐Cheol Kim Austin D. Swafford Rob Knight Loki Natarajan
+	Weighted normalized UniFrac distances	2018	Daniel McDonald Daniel McDonald Adam Robbins‐Pianka Allison E. Mann Alison Vrbanac Amnon Amir Angel Frazier Antonio González-Torres Anupriya Tripathi Ashkaan K. Fahimipour

Common Coauthors

Coauthor	Papers Together
Lingjing Jiang	5
Rob Knight	5
Yoshiki Vázquez‐Baeza	3
Laxmi Parida	2
Niina Haiminen	2
Jane J. Kim	2
Ho‐Cheol Kim	2
Anna Paola Carrieri	2
Wesley K. Thompson	2
Chris Elrod	2
Loki Natarajan	2
Shi Huang	2
Lívia S. Zaramela	1
Curtis Huttenhower	1
Max Abramson	1
Paul E. Wischmeyer	1
Se Jin Song	1
Joshua Shorenstein	1
Karenina Sanders	1
Christina Warinner	1
Joshua Ladau	1
José A. Navas-Molina	1
Chris Callewaert	1
Elaine Wolfe	1
Evan Bolyen	1
Jacqueline Kerr	1
Dorothy D. Sears	1
Frederic D. Bushman	1
Matthew Jackson	1
Jan S. Suchodolski	1
Alexey V. Melnik	1
Tifani W. Eshoo-Anton	1
Susan Holmes	1
Nadim J. Ajami	1
Rachel S. Park	1
Christopher A. Lowry	1
Alison Vrbanac	1
Shyamal Peddada	1
Daniel McDonald	1
Emily TerAvest	1
Jeroen Raes	1
Scott R. Klemmer	1
Luke Thompson	1
Charles L. Raison	1
Robert R. Dunn	1
Katherine S. Pollard	1
Joseph F. Petrosino	1
Stephanie Moorman	1
Pavel A. Pevzner	1
Evguenia Kopylova	1

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+ PDF Chat	Shannon Entropy and Mutual Information for Multivariate Skew‐Elliptical Distributions	2012	Reinaldo B. Arellano‐Valle Javier E. Contreras‐Reyes Marc G. Genton	2
+ PDF Chat	Sparse and Compositionally Robust Inference of Microbial Ecological Networks	2015	Zachary Kurtz Christian L. Müller Emily R. Miraldi Dan R. Littman Martin J. Blaser Richard Bonneau	2
+	Entropy expressions and their estimators for multivariate distributions	1989	Naeem Ahmed D. V. Gokhale	2
+	Relative Entropy Measures of Multivariate Dependence	1989	Harry Joe	2
+ PDF Chat	On Properties of Functional Principal Components Analysis	2005	Peter Hall Mohammad Hosseini‐Nasab	2
+	Estimating the Mean and Covariance Structure Nonparametrically When the Data are Curves	1991	John A. Rice B. W. Silverman	2
+ PDF Chat	Bayesian correlation estimation	2004	John Liechty Merrill W. Liechty Peter Müller	2
+ PDF Chat	A Geometric Approach to Maximum Likelihood Estimation of the Functional Principal Components From Sparse Longitudinal Data	2009	Jie Peng Debashis Paul	2
+	Regression Shrinkage and Selection Via the Lasso	1996	Robert Tibshirani	2
+	Functional Data Analysis for Sparse Longitudinal Data	2005	Fang Yao Hans‐Georg Müller Jane-Ling Wang	2
+ PDF Chat	Multilevel sparse functional principal component analysis	2014	Chongzhi Di Ciprian M. Crainiceanu Wolfgang Jank	2
+	Nested cross-validation when selecting classifiers is overzealous for most practical applications	2018	Jacques Wainer Gavin C. Cawley	2
+	The Statistical Analysis of Compositional Data	1982	J. Aitchison	2
+	Regression analysis for microbiome compositional data	2016	Pixu Shi Anru R. Zhang Hongzhe Li	2
+	Multivariate functional principal component analysis: A normalization approach	2013	Jeng‐Min Chiou Yafang Yang Yuting Chen	1
+ PDF Chat	Practical Bayesian model evaluation using leave-one-out cross-validation and WAIC	2016	Aki Vehtari Andrew Gelman Jonah Gabry	1
+	An Introduction to the Bootstrap	1994	Bradley Efron Robert Tibshirani	1
+ PDF Chat	Stability Selection	2010	Nicolai Meinshausen Peter Bühlmann	1
+ PDF Chat	<i>Stan</i>: A Probabilistic Programming Language	2017	Bob Carpenter Andrew Gelman Matthew D. Hoffman Daniel C. Lee Ben Goodrich Michael Betancourt Marcus A. Brubaker Jiqiang Guo Peter Li Allen Riddell	1
+	Longitudinal data analysis using matrix completion.	2018	Łukasz Kidziński Trevor Hastie	1
+	Numerical Linear Algebra for Applications in Statistics	1998	James E. Gentle	1
+	BayesTime: Bayesian Functional Principal Components for Sparse Longitudinal Data	2020	Lingjing Jiang Yuan Zhong Chris Elrod Loki Natarajan Rob Knight Wesley K. Thompson	1
+ PDF Chat	Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data	2021	Lingjing Jiang Niina Haiminen Anna Paola Carrieri Shi Huang Yoshiki Vázquez‐Baeza Laxmi Parida Ho‐Cheol Kim Austin D. Swafford Rob Knight Loki Natarajan	1
+ PDF Chat	Estimation Stability With Cross-Validation (ESCV)	2015	Chinghway Lim Bin Yu	1
+	Principal component models for sparse functional data	2000	Gareth James	1
+ PDF Chat	Multilevel functional principal component analysis	2009	Chongzhi Di Ciprian M. Crainiceanu Brian Caffo Naresh M. Punjabi	1
+	Functional Data Analysis	1997	J. O. Ramsay Bernard W. Silverman	1
+	Generalized Linear Models With Linear Constraints for Microbiome Compositional Data	2018	Jiarui Lu Pixu Shi Hongzhe Li	1