Thomas Helmer

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All published works

Action	Title	Year	Authors
+ PDF Chat	Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning	2022	Sema Nickbakhsh Joseph Hughes Nicolaos Christofidis Emily Griffiths Sharif Shaaban Jessica Enright Katherine Smollett Kyriaki Nomikou Natasha Palmalux L. Tong
+ PDF Chat	Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission	2022	Dinesh Aggarwal Andrew J. Page Ulf Schaefer George M. Savva Richard Myers Erik Volz Nicholas Ellaby Steven G. Platt Natalie Groves Eileen Gallagher
+ PDF Chat	Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission	2022	Dinesh Aggarwal Ben Warne Aminu S. Jahun William L. Hamilton Thomas Fieldman Louis du Plessis Verity Hill Beth Blane Emmeline Watkins Elizabeth Wright
+	Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity	2020	Erik Volz Verity Hill John T. McCrone Anna Price David Jorgensen Áine O’Toole Joel Southgate Robert A. Johnson Ben Jackson Fabrícia F. Nascimento

Common Coauthors

Coauthor	Papers Together
Nicholas J. Loman	4
David Bonsall	4
Verity Hill	4
M. Estée Török	4
Gemma Clark	4
Robin Manley	4
Joshua Maksimovic	4
Johnathan M. Evans	4
Sharon J. Peacock	4
Gerry Tonkin‐Hill	4
Johnny Debebe	4
Stephen Campbell	4
Brendan Payne	4
Sahar Eldirdiri	4
Daniel Mair	4
Yann Bourgeois	4
Iliana Georgana	4
Louis du Plessis	4
Ian Goodfellow	4
C. Patrick McClure	4
Kelly Bicknell	4
Jonathan Hubb	4
Alex E. Zarebski	4
John A. Todd	4
Manon Ragonnet‐Cronin	4
Colin P. Smith	4
Richard Eccles	4
Mailis Maes	4
Emma C. Thomson	4
Steven Liggett	4
David Buck	4
Ember Hilvers	4
Chloe Bishop	4
Ben Temperton	4
Kathryn Harris	4
Zoltán Molnár	4
Benjamin B. Lindsey	4
Lizzie Meadows	4
Chris Williams	4
Matilde Mori	4
Ian Harrison	4
Luke B. Snell	4
Lee Graham	4
Nichola Duckworth	4
David Simpson	4
Nicola Sheriff	4
Jon-Paul Keatley	4
Sarah Wyllie	4
Noel Craine	4
Angela H. Beckett	4

Commonly Cited References

Action	Title	Year	Authors	# of times referenced
+ PDF Chat	GISAID: Global initiative on sharing all influenza data – from vision to reality	2017	Yuelong Shu John W. McCauley	3
+ PDF Chat	Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission	2022	Dinesh Aggarwal Ben Warne Aminu S. Jahun William L. Hamilton Thomas Fieldman Louis du Plessis Verity Hill Beth Blane Emmeline Watkins Elizabeth Wright	2
+	Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020	2020	Emma B. Hodcroft Moira Zuber Sarah Nadeau Timothy G. Vaughan Katharine H. D. Crawford Christian L. Althaus Martina L. Reichmuth John E. Bowen Alexandra C. Walls Davide Corti	2
+ PDF Chat	A2B-COVID: A Tool for Rapidly Evaluating Potential SARS-CoV-2 Transmission Events	2022	Christopher J. R. Illingworth William L. Hamilton Christopher Jackson Ben Warne A.I. Popay Luke Meredith Myra Hosmillo Aminu S. Jahun Tom Fieldman Matthew Routledge	2
+ PDF Chat	glmmTMB Balances Speed and Flexibility Among Packages for Zero-inflated Generalized Linear Mixed Modeling	2017	M. Brooks Kasper Kristensen Koen J. van Benthem Árni Magnússon Casper Willestofte Berg Anders Nielsen James S. Hans Martin Mächler M. Bolker Benjamin	1
+ PDF Chat	Minimap2: pairwise alignment for nucleotide sequences	2018	Heng Li	1
+ PDF Chat	Advanced Bayesian Multilevel Modeling with the R Package brms	2018	Paul‐Christian Bürkner	1
+	Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia	2020	Qun Li Xuhua Guan Peng Wu Xiaoye Wang Lei Zhou Yeqing Tong Ruiqi Ren Kathy Leung Eric H. Y. Lau Jessica Y. Wong	1
+	Transmission of 2019-nCoV Infection from an Asymptomatic Contact in Germany	2020	Camilla Rothe Mirjam Schunk Peter Sothmann Gisela Bretzel Guenter Froeschl Claudia Wallrauch Thorbjörn Zimmer Verena Thiel Christian Jänke Wolfgang Guggemos	1
+	The first two cases of 2019‐nCoV in Italy: Where they come from?	2020	Marta Giovanetti Domenico Benvenuto Silvia Angeletti Massimo Ciccozzi	1
+	Impact of international travel and border control measures on the global spread of the novel 2019 coronavirus outbreak	2020	Chad R. Wells Pratha Sah Seyed M. Moghadas Abhishek Pandey Affan Shoukat Yaning Wang Zheng Wang Lauren Ancel Meyers Burton H. Singer Alison P. Galvani	1
+	Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (SARS-CoV-2)	2020	Ruiyun Li Sen Pei Бин Чэн Yimeng Song Zhang Tao Wan Yang Jeffrey Shaman	1
+	Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China	2020	Akira Endo Sam Abbott Adam J. Kucharski Sebastian Funk	1
+ PDF Chat	Temporal dynamics in viral shedding and transmissibility of COVID-19	2020	Xi He Eric H. Y. Lau Peng Wu Xilong Deng Jian Wang Xinxin Hao Yiu Chung Lau Jessica Y. Wong Yujuan Guan Xinghua Tan	1
+ PDF Chat	Reducing onward spread of COVID-19 from imported cases: quarantine and ‘stay at home’ measures for travellers and returning residents to Singapore	2020	Calvin J. Chiew Zongbin Li Vernon J. Lee	1
+ PDF Chat	Investigation of a COVID-19 outbreak in Germany resulting from a single travel-associated primary case: a case series	2020	Merle M. Böhmer Udo Buchholz Victor M. Corman Martin Hoch Katharina Katz Durdica Marosevic Stefanie Böhm Tom Woudenberg Nikolaus Ackermann Regina Konrad	1
+ PDF Chat	Importation and early local transmission of COVID-19 in Brazil, 2020	2020	Jaqueline Góes de Jesus Cláudio Tavares Sacchi Darlan da Silva Cândido Ingra Morales Claro Flavia Cristina da Silva Sales Erika R. Manuli Daniela Bernardes Borges da Silva Terezinha Maria de Paiva Margarete Aparecida Benega Pinho Katia Corrêa de Oliveira Santos	1
+	Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel	2020	Danielle Miller Michael A. Martin Noam Harel Talia Kustin Omer Tirosh Moran Meir Nadav Sorek Shiraz Gefen-Halevi Sharon Amit Olesya Vorontsov	1
+	A Unique Clade of SARS-CoV-2 Viruses is Associated with Lower Viral Loads in Patient Upper Airways	2020	Ramón Lorenzo-Redondo Hannah Nam Scott C. Roberts Lacy M. Simons Lawrence J. Jennings Chao Qi Chad J. Achenbach Alan R. Hauser Michael G. Ison Judd F. Hultquist	1
+ PDF Chat	Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe	2020	Seth Flaxman Swapnil Mishra Axel Gandy H. Juliette T. Unwin Thomas A. Mellan Helen Coupland Charles Whittaker Harrison Zhu Tresnia Berah Jeffrey W. Eaton	1
+ PDF Chat	Public Health Emergency and Crisis Management: Case Study of SARS-CoV-2 Outbreak	2020	Hemin Choi Wonhyuk Cho Min-Hyu Kim Joon-Young Hur	1
+ PDF Chat	Age-dependent effects in the transmission and control of COVID-19 epidemics	2020	Nicholas G. Davies Petra Klepac Yang Liu Kiesha Prem Mark Jit Carl A. B. Pearson Billy J. Quilty Adam J. Kucharski Hamish Gibbs Samuel Clifford	1
+	Effectiveness of isolation, testing, contact tracing, and physical distancing on reducing transmission of SARS-CoV-2 in different settings: a mathematical modelling study	2020	Adam J. Kucharski Petra Klepac Andrew J. K. Conlan Stephen M. Kissler Maria Tang Hannah Fry Julia R. Gog W. John Edmunds Jon C. Emery Graham F. Medley	1
+ PDF Chat	The impact of COVID-19 and strategies for mitigation and suppression in low- and middle-income countries	2020	Patrick Walker Charles Whittaker Oliver J. Watson Marc Baguelin Peter Winskill Arran Hamlet Bimandra A. Djafaara Zulma M. Cucunubá Daniela Olivera Mesa William D. Green	1
+	Temporal data series of COVID-19 epidemics in the USA, Asia and Europe suggests a selective sweep of SARS-CoV-2 Spike D614G variant	2020	Furuyama Tn Fernando Antoneli Carvalho Imvg Marcelo R. S. Briones Janini Lmr	1
+	Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus	2020	Bette Korber Will Fischer S. Gnanakaran Hyejin Yoon James Theiler W. P. Abfalterer Nicolas Hengartner Elena E. Giorgi Tanmoy Bhattacharya Brian Foley	1
+	Large SARS-CoV-2 Outbreak Caused by Asymptomatic Traveler, China	2020	Jianwen Liu Jiaquan Huang Dandan Xiang	1
+ PDF Chat	Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling	2020	Rebecca J. Rockett Alicia Arnott Connie Lam Rosemarie Sadsad Verlaine J. Timms Karen-Ann Gray John‐Sebastian Eden Sheryl L. Chang Mailie Gall Jenny Draper	1
+ PDF Chat	Molecular Tracing of SARS-CoV-2 in Italy in the First Three Months of the Epidemic	2020	Alessia Lai Annalisa Bergna Sara Caucci Nicola Clementi Ilaria Vicenti Filippo Dragoni Anna Maria Cattelan Stefano Menzo Angelo Pan Annapaola Callegaro	1
+ PDF Chat	COVID-19 infectivity profile correction	2020	Peter Ashcroft Jana S. Huisman Sonja Lehtinen Judith A. Bouman Christian L. Althaus Roland R. Regoes Sebastian Bonhoeffer	1
+ PDF Chat	Temporal signal and the phylodynamic threshold of SARS-CoV-2	2020	Sebastián Duchêne Leo Featherstone Melina Haritopoulou-Sinanidou Andrew Rambaut Philippe Lemey Guy Baele	1
+	Estimates of outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data	2020	Timothy G. Vaughan Jérémie Scire Sarah Nadeau Tanja Stadler	1
+ PDF Chat	The emergence of SARS-CoV-2 in Europe and North America	2020	Michael Worobey Jonathan E. Pekar Brendan B. Larsen Martha I. Nelson Verity Hill Jeffrey B. Joy Andrew Rambaut Marc A. Suchard Joel O. Wertheim Philippe Lemey	1
+ PDF Chat	Clustering and superspreading potential of SARS-CoV-2 infections in Hong Kong	2020	Dillon C. Adam Peng Wu Jessica Y. Wong Eric H. Y. Lau Tim K. Tsang Simon Cauchemez GM Leung Benjamin J. Cowling	1
+	A2B-COVID: A method for evaluating potential SARS-CoV-2 transmission events	2020	Christopher J. R. Illingworth William L. Hamilton Christopher Jackson A.I. Popay Luke Meredith Charlotte J. Houldcroft Myra Hosmillo Aminu S. Jahun Matthew Routledge Ben Warne	1
+ PDF Chat	Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel	2020	Danielle Miller Michael A. Martin Noam Harel Omer Tirosh Talia Kustin Moran Meir Nadav Sorek Shiraz Gefen-Halevi Sharon Amit Olesya Vorontsov	1
+	Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report	2020	Jennifer Giandhari Sureshnee Pillay Eduan Wilkinson Houriiyah Tegally Ilya Sinayskiy Maria Schuld José Lourenço Benjamin Chimukangara Richard Lessells Mahomed‐Yunus S. Moosa	1
+	Severe Acute Respiratory Syndrome Coronavirus 2 Outbreak Related to a Nightclub, Germany, 2020	2020	Nadine Müller Mareike Kunze Fabienne Steitz Neil J. Saad Barbara Mühlemann Jörn Beheim-Schwarzbach Julia Schneider Christian Drosten Lukáš Murajda Sandra Kochs	1
+ PDF Chat	Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand	2020	Jemma L. Geoghegan Xiaoyun Ren Matthew Storey James Hadfield Lauren Jelley Sarah Jefferies Jill Sherwood Shevaun Paine Q. Sue Huang Jordan Douglas	1
+ PDF Chat	Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland	2020	Ana da Silva Filipe James G. Shepherd Thomas Williams Joseph Hughes Elihú Aranday-Cortés Patawee Asamaphan Shirin Ashraf Carlos E. Balcazar Kirstyn Brunker Alasdair Campbell	1
+ PDF Chat	Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK	2021	Louis du Plessis John T. McCrone Alexander E. Zarebski Verity Hill Christopher Ruis Bernardo Gutiérrez Jayna Raghwani Jordan Ashworth Rachel Colquhoun Thomas R. Connor	1
+	The origin and early spread of SARS-CoV-2 in Europe	2021	Sarah Nadeau Timothy G. Vaughan Jérémie Scire Jana S. Huisman Tanja Stadler	1
+	New SARS-CoV-2 Variants — Clinical, Public Health, and Vaccine Implications	2021	Salim S. Abdool Karim Túlio de Oliveira	1
+ PDF Chat	Adherence to the test, trace, and isolate system in the UK: results from 37 nationally representative surveys	2021	Louise Smith Henry Potts Richard Amlôt Nicola T. Fear Susan Michie G. James Rubin	1
+	Reducing travel-related SARS-CoV-2 transmission with layered mitigation measures: symptom monitoring, quarantine, and testing	2021	Michael A. Johansson Hannah Wolford Prabasaj Paul Pamela S. Diaz Tai-Ho Chen Clive Brown Martín S. Cetron Francisco Alvarado‐Ramy	1
+ PDF Chat	Will SARS-CoV-2 variants of concern affect the promise of vaccines?	2021	Ravindra K. Gupta	1
+	Spread of a SARS-CoV-2 variant through Europe in the summer of 2020	2021	Emma B. Hodcroft Moira Zuber Sarah Nadeau Timothy G. Vaughan Katharine H. D. Crawford Christian L. Althaus Martina L. Reichmuth John E. Bowen Alexandra C. Walls Davide Corti	1
+	Modelling SARS-CoV-2 transmission in a UK university setting	2021	Edward M. Hill Benjamin D. Atkins Matt J. Keeling Michael J. Tildesley Louise Dyson	1
+ PDF Chat	Global variation in sequencing impedes SARS-CoV-2 surveillance	2021	Dana C. Crawford Scott M. Williams	1
+	SARS-CoV-2 infection in UK university students: lessons from September–December 2020 and modelling insights for future student return	2021	Jessica Enright Edward M. Hill Helena B. Stage Kirsty J. Bolton Emily Nixon Emma L. Fairbanks Maria Tang Ellen Brooks‐Pollock Louise Dyson Chris Budd	1